View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5485_low_6 (Length: 300)
Name: NF5485_low_6
Description: NF5485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5485_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 19 - 288
Target Start/End: Complemental strand, 39679705 - 39679436
Alignment:
| Q |
19 |
attaaaatgttcgtcttctcgaaggagtggtaagtattttgcaaccgcgagtggcgcactttgatcaaaacggatttgatctttccaccattcgcgtaaa |
118 |
Q |
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| T |
39679705 |
attaaaatgttcgtcttctcgaaggagtggtaagtattttgcaaccgcgagtggcgcgctttgatcaaaacggatttgatctttccaccattcgcgtaaa |
39679606 |
T |
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| Q |
119 |
ctatcagacgaacctgataccggtttacccttttcagggatgattccatagacaaaacctttggctttgcatacatccatgatctttgccatgtatttga |
218 |
Q |
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| T |
39679605 |
ctatcagacgaacctgataccggtttacccttttcagggatgattccatagacaaaacctttggctttgcatacatccatgatctttgccatgtatttga |
39679506 |
T |
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| Q |
219 |
gtactgaatcttgtgctcttgacatctttttccttcttgatgcttcttgttttgcttgttgcacaggttc |
288 |
Q |
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| T |
39679505 |
gtactgaatcttgtgctcttgacatctttttccttcttgatgcttcttgttttgcttgttgctcaggttc |
39679436 |
T |
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Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 98 - 279
Target Start/End: Complemental strand, 38052169 - 38051988
Alignment:
| Q |
98 |
tctttccaccattcgcgtaaactatcagacgaacctgataccggtttacccttttcagggatgattccatagacaaaacctttggctttgcatacatcca |
197 |
Q |
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|||||||||||||| || || || || || ||||||| ||| ||||| || || || || | || |||||||||||||||| |||||||||| || |
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| T |
38052169 |
tctttccaccattcacgcaagctttctgaagaacctgttactggttttcctttctctggaacaataccatagacaaaaccttgagctttgcatattgtca |
38052070 |
T |
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| Q |
198 |
tgatctttgccatgtatttgagtactgaatcttgtgctcttgacatctttttccttcttgatgcttcttgttttgcttgttg |
279 |
Q |
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| T |
38052069 |
taatcttcatcatgtatttgagaattgaatcttgtgctcttgacatctttttccttcttgatgcctcatcttttgcttgttg |
38051988 |
T |
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