View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5486_high_11 (Length: 250)
Name: NF5486_high_11
Description: NF5486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5486_high_11 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 1488438 - 1488681
Alignment:
| Q |
1 |
aaaggattggagttggaaagggtaaagccttcctcactcaggttaagttaagtagtctttcactattctgactgctcctaataatatccttcaatatttt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1488438 |
aaaggattggagttggaaagggtaaagccttcctcactcaggttaagttaagtagtctttcactattctgactgctcctaataatatccttcaatatttt |
1488537 |
T |
|
| Q |
101 |
cctatataaannnnnnntctttactc-tctcaattcactaaccattcttattctctctaatactttcagtttcatcactttcattgaaacaaaaattgtt |
199 |
Q |
| |
|
|||||||||| || |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1488538 |
cctatataaaccccccctcattactcttctcaattcactaaccattcttattctctctaatactttcagtttcatcactttcattgaaacaaaaattgtt |
1488637 |
T |
|
| Q |
200 |
tgaaaatggctatgaaacgtgctgcttccccgttgatctctgct |
243 |
Q |
| |
|
||||||||||||||||||||||||||||| | |||||| ||||| |
|
|
| T |
1488638 |
tgaaaatggctatgaaacgtgctgcttccaccttgatcactgct |
1488681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University