View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5486_high_14 (Length: 238)

Name: NF5486_high_14
Description: NF5486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5486_high_14
NF5486_high_14
[»] chr6 (10 HSPs)
chr6 (7-222)||(1488129-1488344)
chr6 (179-218)||(20568268-20568307)
chr6 (161-220)||(29204862-29204921)
chr6 (151-214)||(29430287-29430349)
chr6 (165-222)||(14949016-14949074)
chr6 (162-215)||(19680242-19680295)
chr6 (162-215)||(34524923-34524976)
chr6 (182-222)||(10377138-10377178)
chr6 (162-214)||(26669653-26669705)
chr6 (162-218)||(30833062-30833118)
[»] chr3 (15 HSPs)
chr3 (162-218)||(32080100-32080156)
chr3 (161-207)||(4010011-4010057)
chr3 (161-223)||(36842202-36842264)
chr3 (161-222)||(6054218-6054279)
chr3 (162-215)||(21248984-21249037)
chr3 (161-218)||(28951911-28951968)
chr3 (162-222)||(27119317-27119377)
chr3 (162-214)||(40160784-40160836)
chr3 (179-218)||(32508805-32508844)
chr3 (179-218)||(54983716-54983755)
chr3 (176-214)||(50676875-50676913)
chr3 (181-218)||(28963009-28963046)
chr3 (174-218)||(4478374-4478418)
chr3 (179-215)||(49639076-49639112)
chr3 (176-212)||(50271780-50271816)
[»] chr1 (24 HSPs)
chr1 (162-222)||(2903021-2903081)
chr1 (162-218)||(9768803-9768859)
chr1 (183-218)||(35619023-35619058)
chr1 (161-214)||(9769573-9769626)
chr1 (172-217)||(22779269-22779314)
chr1 (162-218)||(41677105-41677161)
chr1 (175-214)||(2350382-2350421)
chr1 (176-218)||(19424091-19424133)
chr1 (176-222)||(33843175-33843221)
chr1 (176-222)||(33950758-33950804)
chr1 (180-218)||(41833547-41833585)
chr1 (162-215)||(3341730-3341783)
chr1 (177-214)||(10629415-10629452)
chr1 (162-215)||(18003864-18003917)
chr1 (161-218)||(23750195-23750252)
chr1 (179-216)||(27745204-27745241)
chr1 (162-215)||(50199470-50199523)
chr1 (182-215)||(52833120-52833153)
chr1 (174-210)||(9007796-9007832)
chr1 (162-218)||(11238022-11238078)
chr1 (162-214)||(12553243-12553295)
chr1 (161-212)||(23758245-23758297)
chr1 (182-218)||(44949545-44949581)
chr1 (162-218)||(48260183-48260239)
[»] chr7 (17 HSPs)
chr7 (162-215)||(35195891-35195944)
chr7 (161-218)||(44409246-44409302)
chr7 (162-214)||(10020463-10020515)
chr7 (162-218)||(43635633-43635689)
chr7 (162-218)||(48007067-48007123)
chr7 (162-213)||(1649202-1649253)
chr7 (179-218)||(30152786-30152825)
chr7 (161-211)||(23470494-23470544)
chr7 (161-211)||(38328560-38328610)
chr7 (175-217)||(48258191-48258233)
chr7 (162-215)||(8725133-8725185)
chr7 (164-213)||(28968679-28968728)
chr7 (161-210)||(41000813-41000862)
chr7 (161-209)||(41012573-41012622)
chr7 (174-222)||(7392312-7392360)
chr7 (162-214)||(10958082-10958134)
chr7 (182-218)||(24304297-24304333)
[»] chr2 (10 HSPs)
chr2 (162-223)||(12206538-12206599)
chr2 (161-212)||(33124358-33124409)
chr2 (161-211)||(44487760-44487810)
chr2 (162-214)||(1244618-1244670)
chr2 (165-214)||(6952321-6952370)
chr2 (179-216)||(7889305-7889342)
chr2 (182-219)||(17115558-17115595)
chr2 (181-218)||(41699147-41699184)
chr2 (162-218)||(14307688-14307744)
chr2 (176-212)||(43684329-43684365)
[»] chr5 (19 HSPs)
chr5 (162-222)||(37986861-37986921)
chr5 (173-222)||(15106892-15106941)
chr5 (162-215)||(28537183-28537236)
chr5 (162-218)||(31556863-31556919)
chr5 (179-218)||(18872566-18872605)
chr5 (161-215)||(3535929-3535983)
chr5 (161-207)||(22687874-22687920)
chr5 (161-215)||(29561696-29561750)
chr5 (162-207)||(39760130-39760176)
chr5 (162-216)||(42260714-42260768)
chr5 (161-218)||(8934826-8934883)
chr5 (161-218)||(38129006-38129063)
chr5 (161-206)||(39684295-39684340)
chr5 (185-217)||(3102144-3102176)
chr5 (162-214)||(22396982-22397034)
chr5 (162-218)||(27006385-27006441)
chr5 (179-215)||(32158425-32158461)
chr5 (162-218)||(34010580-34010636)
chr5 (162-214)||(40384300-40384352)
[»] chr4 (14 HSPs)
chr4 (162-218)||(24039929-24039985)
chr4 (162-215)||(20610787-20610840)
chr4 (162-214)||(49039439-49039491)
chr4 (179-222)||(35909175-35909217)
chr4 (176-218)||(16556496-16556538)
chr4 (176-218)||(56555593-56555635)
chr4 (161-214)||(21023345-21023398)
chr4 (162-210)||(1589152-1589199)
chr4 (182-218)||(22751054-22751090)
chr4 (182-214)||(27296871-27296903)
chr4 (162-218)||(33359862-33359918)
chr4 (179-215)||(36008323-36008359)
chr4 (182-218)||(36954182-36954218)
chr4 (162-214)||(54854173-54854225)
[»] chr8 (15 HSPs)
chr8 (161-219)||(4604346-4604404)
chr8 (161-222)||(220355-220416)
chr8 (161-222)||(689510-689571)
chr8 (161-222)||(733978-734039)
chr8 (161-222)||(857874-857935)
chr8 (161-222)||(26773695-26773756)
chr8 (179-216)||(30542811-30542848)
chr8 (162-215)||(37523987-37524040)
chr8 (162-218)||(25470840-25470896)
chr8 (175-218)||(10201307-10201350)
chr8 (179-218)||(14683921-14683960)
chr8 (183-218)||(25139902-25139937)
chr8 (164-218)||(19925095-19925149)
chr8 (179-215)||(8034578-8034614)
chr8 (176-216)||(41845437-41845477)
[»] scaffold0002 (1 HSPs)
scaffold0002 (161-215)||(440447-440501)
[»] scaffold0119 (1 HSPs)
scaffold0119 (162-214)||(1088-1140)
[»] scaffold0039 (1 HSPs)
scaffold0039 (179-215)||(101879-101915)


Alignment Details
Target: chr6 (Bit Score: 125; Significance: 2e-64; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 7 - 222
Target Start/End: Complemental strand, 1488344 - 1488129
Alignment:
Q  7 ggttgtatggatgaggtgtaacacaaaagatttgaagg---tcatcgatcatagttatgtgttcgtctaaatatgtttaaccgcagagtttttatagatt 103  Q
    |||||| |||||||||||||||| ||||||||||||||   |||| ||||||||||||||||||||||||||||||||||||||||  ||||||||||||    
T  1488344 ggttgtgtggatgaggtgtaacataaaagatttgaaggaggtcattgatcatagttatgtgttcgtctaaatatgtttaaccgcag--tttttatagatt 1488247  T
Q  104 tgatgcattattatttatttatatgattacatctannnnnnnnnnnngtcaaatagcttagaattcaccattttaaaggtgaataaatgggatgttcggg 203  Q
    |||||||||||||||||||||||||||||||||||            ||||||||| ||||||||||||||||| |||||||||||||||| |||| |||    
T  1488246 tgatgcattattatttatttatatgattacatcta-tttttttttttgtcaaatagtttagaattcaccatttttaaggtgaataaatggggtgtttggg 1488148  T
Q  204 gttcgaaccccgacctctg 222  Q
    |||||||||||||||||||    
T  1488147 gttcgaaccccgacctctg 1488129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 179 - 218
Target Start/End: Original strand, 20568268 - 20568307
Alignment:
Q  179 aaggtgaataaatgggatgttcggggttcgaaccccgacc 218  Q
    ||||||||||| |||| |||||||||||||||||||||||    
T  20568268 aaggtgaataagtggggtgttcggggttcgaaccccgacc 20568307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 161 - 220
Target Start/End: Original strand, 29204862 - 29204921
Alignment:
Q  161 ttagaattcaccattttaaaggtgaataaatgggatgttcggggttcgaaccccgacctc 220  Q
    |||||||||||  |||| ||||||||||| |||| ||||||  |||||||||||||||||    
T  29204862 ttagaattcactttttttaaggtgaataagtggggtgttcgaagttcgaaccccgacctc 29204921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 151 - 214
Target Start/End: Original strand, 29430287 - 29430349
Alignment:
Q  151 gtcaaatagcttagaattcaccattttaaaggtgaataaatgggatgttcggggttcgaacccc 214  Q
    ||||||||||| |||||| ||| |||||||||||||||| |||| ||| || ||||||||||||    
T  29430287 gtcaaatagct-agaatttacctttttaaaggtgaataagtggggtgtccgaggttcgaacccc 29430349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 222
Target Start/End: Original strand, 14949016 - 14949074
Alignment:
Q  165 aattcaccattttaaaggtgaataaat-gggatgttcggggttcgaaccccgacctctg 222  Q
    |||||||| |||| ||||||||||||| ||| ||| ||| |||||||||||||||||||    
T  14949016 aattcacctttttcaaggtgaataaatgggggtgtccggagttcgaaccccgacctctg 14949074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 162 - 215
Target Start/End: Original strand, 19680242 - 19680295
Alignment:
Q  162 tagaattcaccattttaaaggtgaataaatgggatgttcggggttcgaaccccg 215  Q
    ||||||||||| |||| |||| |||||| |||| ||| ||||||||||||||||    
T  19680242 tagaattcacctttttcaaggagaataagtggggtgtccggggttcgaaccccg 19680295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 162 - 215
Target Start/End: Complemental strand, 34524976 - 34524923
Alignment:
Q  162 tagaattcaccattttaaaggtgaataaatgggatgttcggggttcgaaccccg 215  Q
    ||||||||||| ||||  |||||||||| |||| ||||||||| ||||||||||    
T  34524976 tagaattcacctttttccaggtgaataagtggggtgttcggggctcgaaccccg 34524923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 222
Target Start/End: Original strand, 10377138 - 10377178
Alignment:
Q  182 gtgaataaatgggatgttcggggttcgaaccccgacctctg 222  Q
    |||||||| |||| |||||||||||||||||||| ||||||    
T  10377138 gtgaataagtggggtgttcggggttcgaaccccggcctctg 10377178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 214
Target Start/End: Original strand, 26669653 - 26669705
Alignment:
Q  162 tagaattcaccattttaaaggtgaataaatgggatgttcggggttcgaacccc 214  Q
    ||||||||||| |||| ||||||||||| |||| |||  ||||||||||||||    
T  26669653 tagaattcacctttttcaaggtgaataagtggggtgtctggggttcgaacccc 26669705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 218
Target Start/End: Complemental strand, 30833118 - 30833062
Alignment:
Q  162 tagaattcaccattttaaaggtgaataaatgggatgttcggggttcgaaccccgacc 218  Q
    |||||||| || |||| |||| |||||| |||| ||| |||||||||||||||||||    
T  30833118 tagaattctcctttttcaaggagaataagtggggtgtccggggttcgaaccccgacc 30833062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 162 - 218
Target Start/End: Complemental strand, 32080156 - 32080100
Alignment:
Q  162 tagaattcaccattttaaaggtgaataaatgggatgttcggggttcgaaccccgacc 218  Q
    ||||||||||| |||| ||||||||||| |||| |||||||||||||||||||||||    
T  32080156 tagaattcacctttttcaaggtgaataagtggggtgttcggggttcgaaccccgacc 32080100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 161 - 207
Target Start/End: Original strand, 4010011 - 4010057
Alignment:
Q  161 ttagaattcaccattttaaaggtgaataaatgggatgttcggggttc 207  Q
    |||||||||| |||||| |||||||||||||||| ||||||||||||    
T  4010011 ttagaattcaacattttcaaggtgaataaatggggtgttcggggttc 4010057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 161 - 223
Target Start/End: Complemental strand, 36842264 - 36842202
Alignment:
Q  161 ttagaattcaccattttaaaggtgaataaatgggatgttcggggttcgaaccccgacctctga 223  Q
    |||||||||||  |||| || |||||||| |||||||| ||||||||||||||||||| ||||    
T  36842264 ttagaattcacttttttcaaagtgaataagtgggatgtacggggttcgaaccccgacccctga 36842202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 161 - 222
Target Start/End: Original strand, 6054218 - 6054279
Alignment:
Q  161 ttagaattcaccattttaaaggtgaataaatgggatgttcggggttcgaaccccgacctctg 222  Q
    |||||||||||| |||| ||||||||||| || | ||||||| |||||||| ||||||||||    
T  6054218 ttagaattcacctttttcaaggtgaataagtgaggtgttcggagttcgaactccgacctctg 6054279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 162 - 215
Target Start/End: Original strand, 21248984 - 21249037
Alignment:
Q  162 tagaattcaccattttaaaggtgaataaatgggatgttcggggttcgaaccccg 215  Q
    ||||||||||| |||| ||||||||||| |||| ||||| ||||||||||||||    
T  21248984 tagaattcacctttttcaaggtgaataagtggggtgttcagggttcgaaccccg 21249037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 161 - 218
Target Start/End: Complemental strand, 28951968 - 28951911
Alignment:
Q  161 ttagaattcaccattttaaaggtgaataaatgggatgttcggggttcgaaccccgacc 218  Q
    |||||||||||  |||| ||||||||||| |||| |||||||||||||||||| ||||    
T  28951968 ttagaattcacatttttcaaggtgaataagtggggtgttcggggttcgaaccctgacc 28951911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 162 - 222
Target Start/End: Complemental strand, 27119377 - 27119317
Alignment:
Q  162 tagaattcaccattttaaaggtgaataaatgggatgttcggggttcgaaccccgacctctg 222  Q
    |||||||| || |||||||||  ||||| |||| |||||||| ||||||||||||||||||    
T  27119377 tagaattctcctttttaaaggaaaataagtggggtgttcgggattcgaaccccgacctctg 27119317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 162 - 214
Target Start/End: Complemental strand, 40160836 - 40160784
Alignment:
Q  162 tagaattcaccattttaaaggtgaataaatgggatgttcggggttcgaacccc 214  Q
    ||||||||||| |||||||||||||||| |||| ||| |||||||| ||||||    
T  40160836 tagaattcacctttttaaaggtgaataagtggggtgtccggggttcaaacccc 40160784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 179 - 218
Target Start/End: Original strand, 32508805 - 32508844
Alignment:
Q  179 aaggtgaataaatgggatgttcggggttcgaaccccgacc 218  Q
    ||||||||||| |||| |||||||||||||||||||||||    
T  32508805 aaggtgaataagtggggtgttcggggttcgaaccccgacc 32508844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 179 - 218
Target Start/End: Original strand, 54983716 - 54983755
Alignment:
Q  179 aaggtgaataaatgggatgttcggggttcgaaccccgacc 218  Q
    |||||||||||||||| ||| |||||||||||||||||||    
T  54983716 aaggtgaataaatggggtgtccggggttcgaaccccgacc 54983755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 214
Target Start/End: Original strand, 50676875 - 50676913
Alignment:
Q  176 ttaaaggtgaataaatgggatgttcggggttcgaacccc 214  Q
    |||||||||||||| |||| |||||||||||||||||||    
T  50676875 ttaaaggtgaataagtggggtgttcggggttcgaacccc 50676913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 181 - 218
Target Start/End: Complemental strand, 28963046 - 28963009
Alignment:
Q  181 ggtgaataaatgggatgttcggggttcgaaccccgacc 218  Q
    ||||||||| ||||||||||||| ||||||||||||||    
T  28963046 ggtgaataagtgggatgttcgggattcgaaccccgacc 28963009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 218
Target Start/End: Original strand, 4478374 - 4478418
Alignment:
Q  174 ttttaaaggtgaataaatgggatgttcggggttcgaaccccgacc 218  Q
    |||||||| ||||||| |||||||| |||| ||||||||||||||    
T  4478374 ttttaaagatgaataagtgggatgtccgggattcgaaccccgacc 4478418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 215
Target Start/End: Complemental strand, 49639112 - 49639076
Alignment:
Q  179 aaggtgaataaatgggatgttcggggttcgaaccccg 215  Q
    ||||||||||| |||| ||||||||||||||||||||    
T  49639112 aaggtgaataagtggggtgttcggggttcgaaccccg 49639076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 212
Target Start/End: Complemental strand, 50271816 - 50271780
Alignment:
Q  176 ttaaaggtgaataaatgggatgttcggggttcgaacc 212  Q
    |||||||||||||| |||||||| |||||||||||||    
T  50271816 ttaaaggtgaataagtgggatgtacggggttcgaacc 50271780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 162 - 222
Target Start/End: Original strand, 2903021 - 2903081
Alignment:
Q  162 tagaattcaccattttaaaggtgaataaatgggatgttcggggttcgaaccccgacctctg 222  Q
    |||||||| || |||| ||||||||||| |||| |||||||||||||||||||||||||||    
T  2903021 tagaattctcctttttcaaggtgaataagtggggtgttcggggttcgaaccccgacctctg 2903081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 162 - 218
Target Start/End: Original strand, 9768803 - 9768859
Alignment:
Q  162 tagaattcaccattttaaaggtgaataaatgggatgttcggggttcgaaccccgacc 218  Q
    ||||||||||| |||| ||||||||||| |||| ||| |||||||||||||||||||    
T  9768803 tagaattcacctttttcaaggtgaataagtggggtgtccggggttcgaaccccgacc 9768859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 183 - 218
Target Start/End: Original strand, 35619023 - 35619058
Alignment:
Q  183 tgaataaatgggatgttcggggttcgaaccccgacc 218  Q
    ||||||||||||||||||||||||||||||||||||    
T  35619023 tgaataaatgggatgttcggggttcgaaccccgacc 35619058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 161 - 214
Target Start/End: Original strand, 9769573 - 9769626
Alignment:
Q  161 ttagaattcaccattttaaaggtgaataaatgggatgttcggggttcgaacccc 214  Q
    |||||||||||| |||| ||||||||||| |||| ||| |||||||||||||||    
T  9769573 ttagaattcacctttttcaaggtgaataagtggggtgtccggggttcgaacccc 9769626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 172 - 217
Target Start/End: Complemental strand, 22779314 - 22779269
Alignment:
Q  172 cattttaaaggtgaataaatgggatgttcggggttcgaaccccgac 217  Q
    |||||||||||||||||| |||| |||| |||||||||||||||||    
T  22779314 cattttaaaggtgaataagtggggtgtttggggttcgaaccccgac 22779269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 162 - 218
Target Start/End: Complemental strand, 41677161 - 41677105
Alignment:
Q  162 tagaattcaccattttaaaggtgaataaatgggatgttcggggttcgaaccccgacc 218  Q
    ||||||||||| |||| ||||||||||| |||| ||| ||| |||||||||||||||    
T  41677161 tagaattcacctttttcaaggtgaataagtggggtgtccggagttcgaaccccgacc 41677105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 175 - 214
Target Start/End: Original strand, 2350382 - 2350421
Alignment:
Q  175 tttaaaggtgaataaatgggatgttcggggttcgaacccc 214  Q
    ||||||||||||||| |||| |||||||||||||||||||    
T  2350382 tttaaaggtgaataagtggggtgttcggggttcgaacccc 2350421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 218
Target Start/End: Complemental strand, 19424133 - 19424091
Alignment:
Q  176 ttaaaggtgaataaatgggatgttcggggttcgaaccccgacc 218  Q
    |||||||||||||| |||| ||| |||||||||||||||||||    
T  19424133 ttaaaggtgaataagtggggtgtccggggttcgaaccccgacc 19424091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 222
Target Start/End: Original strand, 33843175 - 33843221
Alignment:
Q  176 ttaaaggtgaataaatgggatgttcggggttcgaaccccgacctctg 222  Q
    ||||| ||||| || |||| |||||||||||||||||||||||||||    
T  33843175 ttaaacgtgaagaagtggggtgttcggggttcgaaccccgacctctg 33843221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 222
Target Start/End: Complemental strand, 33950804 - 33950758
Alignment:
Q  176 ttaaaggtgaataaatgggatgttcggggttcgaaccccgacctctg 222  Q
    ||||| ||||| || |||| |||||||||||||||||||||||||||    
T  33950804 ttaaacgtgaagaagtggggtgttcggggttcgaaccccgacctctg 33950758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 218
Target Start/End: Original strand, 41833547 - 41833585
Alignment:
Q  180 aggtgaataaatgggatgttcggggttcgaaccccgacc 218  Q
    |||||||||| |||| |||||||||||||||||||||||    
T  41833547 aggtgaataagtggggtgttcggggttcgaaccccgacc 41833585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 162 - 215
Target Start/End: Original strand, 3341730 - 3341783
Alignment:
Q  162 tagaattcaccattttaaaggtgaataaatgggatgttcggggttcgaaccccg 215  Q
    ||||||||||| |||| ||||||||||| |||| ||| |||||||||| |||||    
T  3341730 tagaattcacctttttcaaggtgaataagtggggtgtccggggttcgatccccg 3341783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 177 - 214
Target Start/End: Complemental strand, 10629452 - 10629415
Alignment:
Q  177 taaaggtgaataaatgggatgttcggggttcgaacccc 214  Q
    |||||||||||||||||||||| || ||||||||||||    
T  10629452 taaaggtgaataaatgggatgtccgaggttcgaacccc 10629415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 162 - 215
Target Start/End: Complemental strand, 18003917 - 18003864
Alignment:
Q  162 tagaattcaccattttaaaggtgaataaatgggatgttcggggttcgaaccccg 215  Q
    ||||||||||| ||||  |||||||||| |||| ||||||||| ||||||||||    
T  18003917 tagaattcacctttttccaggtgaataagtggggtgttcggggctcgaaccccg 18003864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 161 - 218
Target Start/End: Complemental strand, 23750252 - 23750195
Alignment:
Q  161 ttagaattcaccattttaaaggtgaataaatgggatgttcggggttcgaaccccgacc 218  Q
    |||||||||||| |||| ||| ||||||| |||| ||||| ||||| |||||||||||    
T  23750252 ttagaattcacctttttcaagatgaataagtggggtgttcagggtttgaaccccgacc 23750195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 179 - 216
Target Start/End: Complemental strand, 27745241 - 27745204
Alignment:
Q  179 aaggtgaataaatgggatgttcggggttcgaaccccga 216  Q
    |||||||||||||||| ||| |||||||||||||||||    
T  27745241 aaggtgaataaatggggtgtccggggttcgaaccccga 27745204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 162 - 215
Target Start/End: Original strand, 50199470 - 50199523
Alignment:
Q  162 tagaattcaccattttaaaggtgaataaatgggatgttcggggttcgaaccccg 215  Q
    ||||||| ||| |||| ||||||||||| |||| ||| ||||||||||||||||    
T  50199470 tagaattgacctttttcaaggtgaataagtggggtgtccggggttcgaaccccg 50199523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 215
Target Start/End: Original strand, 52833120 - 52833153
Alignment:
Q  182 gtgaataaatgggatgttcggggttcgaaccccg 215  Q
    ||||||||||||||||| ||||||||||||||||    
T  52833120 gtgaataaatgggatgtccggggttcgaaccccg 52833153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 210
Target Start/End: Original strand, 9007796 - 9007832
Alignment:
Q  174 ttttaaaggtgaataaatgggatgttcggggttcgaa 210  Q
    |||| |||||||||||||| |||||||||||||||||    
T  9007796 ttttcaaggtgaataaatgagatgttcggggttcgaa 9007832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 218
Target Start/End: Original strand, 11238022 - 11238078
Alignment:
Q  162 tagaattcaccattttaaaggtgaataaatgggatgttcggggttcgaaccccgacc 218  Q
    ||||||||||| |||| ||| ||||||| |||| ||| |||| ||||||||||||||    
T  11238022 tagaattcacctttttcaagatgaataagtggggtgtccgggattcgaaccccgacc 11238078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 214
Target Start/End: Complemental strand, 12553295 - 12553243
Alignment:
Q  162 tagaattcaccattttaaaggtgaataaatgggatgttcggggttcgaacccc 214  Q
    ||||||||||| |||| || |||||||| |||| ||| |||||||||||||||    
T  12553295 tagaattcacctttttcaaagtgaataagtggggtgtccggggttcgaacccc 12553243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 212
Target Start/End: Original strand, 23758245 - 23758297
Alignment:
Q  161 ttagaattcaccattttaaaggtgaataaa-tgggatgttcggggttcgaacc 212  Q
    ||||||||||| ||||| ||| |||||||| |||| |||||||||||||||||    
T  23758245 ttagaattcacaatttttaagatgaataaagtggggtgttcggggttcgaacc 23758297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 218
Target Start/End: Complemental strand, 44949581 - 44949545
Alignment:
Q  182 gtgaataaatgggatgttcggggttcgaaccccgacc 218  Q
    ||||||||||||| ||||| |||||||||||||||||    
T  44949581 gtgaataaatggggtgttcagggttcgaaccccgacc 44949545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 218
Target Start/End: Original strand, 48260183 - 48260239
Alignment:
Q  162 tagaattcaccattttaaaggtgaataaatgggatgttcggggttcgaaccccgacc 218  Q
    ||||||||||  |||| ||||||||||| |||| ||| |||||||||||| ||||||    
T  48260183 tagaattcacatttttcaaggtgaataagtggggtgtccggggttcgaactccgacc 48260239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 162 - 215
Target Start/End: Complemental strand, 35195944 - 35195891
Alignment:
Q  162 tagaattcaccattttaaaggtgaataaatgggatgttcggggttcgaaccccg 215  Q
    ||||| ||||| |||| |||||||||||||||| ||||||||||||||||||||    
T  35195944 tagaagtcacctttttcaaggtgaataaatggggtgttcggggttcgaaccccg 35195891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 161 - 218
Target Start/End: Complemental strand, 44409302 - 44409246
Alignment:
Q  161 ttagaattcaccattttaaaggtgaataaatgggatgttcggggttcgaaccccgacc 218  Q
    |||||||||||| |||| ||||||||||| |||| ||||| |||||||||||||||||    
T  44409302 ttagaattcacctttttcaaggtgaataagtggggtgttc-gggttcgaaccccgacc 44409246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 162 - 214
Target Start/End: Original strand, 10020463 - 10020515
Alignment:
Q  162 tagaattcaccattttaaaggtgaataaatgggatgttcggggttcgaacccc 214  Q
    ||||||||||| |||| ||| ||||||| |||| |||||||||||||||||||    
T  10020463 tagaattcacctttttcaagatgaataagtgggttgttcggggttcgaacccc 10020515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 162 - 218
Target Start/End: Complemental strand, 43635689 - 43635633
Alignment:
Q  162 tagaattcaccattttaaaggtgaataaatgggatgttcggggttcgaaccccgacc 218  Q
    ||||||||||| |||  ||||||||||| |||| ||| |||||||||||||||||||    
T  43635689 tagaattcaccctttgtaaggtgaataagtggggtgtccggggttcgaaccccgacc 43635633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 162 - 218
Target Start/End: Complemental strand, 48007123 - 48007067
Alignment:
Q  162 tagaattcaccattttaaaggtgaataaatgggatgttcggggttcgaaccccgacc 218  Q
    ||||||||||| |||  |||||||| || ||||||||||| ||||||||||||||||    
T  48007123 tagaattcaccttttgtaaggtgaacaagtgggatgttcgaggttcgaaccccgacc 48007067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 162 - 213
Target Start/End: Complemental strand, 1649253 - 1649202
Alignment:
Q  162 tagaattcaccattttaaaggtgaataaatgggatgttcggggttcgaaccc 213  Q
    |||||||||||||||| ||||||||||| |||| ||| | ||||||||||||    
T  1649253 tagaattcaccattttcaaggtgaataagtggggtgtccagggttcgaaccc 1649202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 179 - 218
Target Start/End: Complemental strand, 30152825 - 30152786
Alignment:
Q  179 aaggtgaataaatgggatgttcggggttcgaaccccgacc 218  Q
    ||||||||||| |||| |||||||||||||||||||||||    
T  30152825 aaggtgaataagtggggtgttcggggttcgaaccccgacc 30152786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 211
Target Start/End: Original strand, 23470494 - 23470544
Alignment:
Q  161 ttagaattcaccattttaaaggtgaataaatgggatgttcggggttcgaac 211  Q
    |||||| ||||| |||| ||| |||||||||||||||| ||||||||||||    
T  23470494 ttagaactcacctttttcaagatgaataaatgggatgtccggggttcgaac 23470544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 211
Target Start/End: Original strand, 38328560 - 38328610
Alignment:
Q  161 ttagaattcaccattttaaaggtgaataaatgggatgttcggggttcgaac 211  Q
    |||||||| ||| |||| |||||||||||||||| |||| |||||||||||    
T  38328560 ttagaattaacctttttcaaggtgaataaatggggtgtttggggttcgaac 38328610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 217
Target Start/End: Original strand, 48258191 - 48258233
Alignment:
Q  175 tttaaaggtgaataaatgggatgttcggggttcgaaccccgac 217  Q
    |||||||||||||||||||| ||| |||||||||||| |||||    
T  48258191 tttaaaggtgaataaatggggtgtccggggttcgaactccgac 48258233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 162 - 215
Target Start/End: Original strand, 8725133 - 8725185
Alignment:
Q  162 tagaattcaccattttaaaggtgaataaatgggatgttcggggttcgaaccccg 215  Q
    ||||||||||| || ||| ||||||||| |||| ||||||||||||||||||||    
T  8725133 tagaattcacctttataa-ggtgaataagtggggtgttcggggttcgaaccccg 8725185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 164 - 213
Target Start/End: Original strand, 28968679 - 28968728
Alignment:
Q  164 gaattcaccattttaaaggtgaataaatgggatgttcggggttcgaaccc 213  Q
    ||||||||| |||| ||||||||||| || |||||||||||||| |||||    
T  28968679 gaattcacctttttcaaggtgaataagtgagatgttcggggttcaaaccc 28968728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 161 - 210
Target Start/End: Complemental strand, 41000862 - 41000813
Alignment:
Q  161 ttagaattcaccattttaaaggtgaataaatgggatgttcggggttcgaa 210  Q
    |||||||||||  |||| ||||||||||| ||||||||||||| ||||||    
T  41000862 ttagaattcacattttttaaggtgaataagtgggatgttcgggattcgaa 41000813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 161 - 209
Target Start/End: Original strand, 41012573 - 41012622
Alignment:
Q  161 ttagaattcaccatttta-aaggtgaataaatgggatgttcggggttcga 209  Q
    |||||||||||| ||||  ||||||||||| |||||||||||||||||||    
T  41012573 ttagaattcacctttttttaaggtgaataagtgggatgttcggggttcga 41012622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 222
Target Start/End: Original strand, 7392312 - 7392360
Alignment:
Q  174 ttttaaaggtgaataaatgggatgttcggggttcgaaccccgacctctg 222  Q
    |||| ||||||||||| |||| |||||||||||| |||||| |||||||    
T  7392312 ttttcaaggtgaataagtggggtgttcggggttcaaaccccaacctctg 7392360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 214
Target Start/End: Complemental strand, 10958134 - 10958082
Alignment:
Q  162 tagaattcaccattttaaaggtgaataaatgggatgttcggggttcgaacccc 214  Q
    ||||||||||| ||||  |||||||||| |||| ||| |||||||||||||||    
T  10958134 tagaattcaccttttttgaggtgaataagtggggtgtccggggttcgaacccc 10958082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 218
Target Start/End: Original strand, 24304297 - 24304333
Alignment:
Q  182 gtgaataaatgggatgttcggggttcgaaccccgacc 218  Q
    ||||||||||||| ||||||| |||||||||||||||    
T  24304297 gtgaataaatggggtgttcggagttcgaaccccgacc 24304333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 162 - 223
Target Start/End: Complemental strand, 12206599 - 12206538
Alignment:
Q  162 tagaattcaccattttaaaggtgaataaatgggatgttcggggttcgaaccccgacctctga 223  Q
    ||||||||||| |||| |||||||||||  ||| ||||||||||||||||||||||| ||||    
T  12206599 tagaattcacctttttcaaggtgaataagcggggtgttcggggttcgaaccccgacccctga 12206538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 161 - 212
Target Start/End: Original strand, 33124358 - 33124409
Alignment:
Q  161 ttagaattcaccattttaaaggtgaataaatgggatgttcggggttcgaacc 212  Q
    |||||||||||| |||| |||||||||||||| | |||||||||||||||||    
T  33124358 ttagaattcaccttttttaaggtgaataaatgtggtgttcggggttcgaacc 33124409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 161 - 211
Target Start/End: Original strand, 44487760 - 44487810
Alignment:
Q  161 ttagaattcaccattttaaaggtgaataaatgggatgttcggggttcgaac 211  Q
    |||||||||||| |||| ||||||||||| |||||||| ||||||||||||    
T  44487760 ttagaattcaccttttttaaggtgaataagtgggatgtccggggttcgaac 44487810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 162 - 214
Target Start/End: Complemental strand, 1244670 - 1244618
Alignment:
Q  162 tagaattcaccattttaaaggtgaataaatgggatgttcggggttcgaacccc 214  Q
    ||||||||||| |||| ||||||||||| |||| ||| |||||||||||||||    
T  1244670 tagaattcacctttttcaaggtgaataagtggggtgtccggggttcgaacccc 1244618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 165 - 214
Target Start/End: Complemental strand, 6952370 - 6952321
Alignment:
Q  165 aattcaccattttaaaggtgaataaatgggatgttcggggttcgaacccc 214  Q
    |||||||| |||| |||||||||||||||| |||  ||||||||||||||    
T  6952370 aattcaccttttttaaggtgaataaatggggtgtctggggttcgaacccc 6952321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 179 - 216
Target Start/End: Complemental strand, 7889342 - 7889305
Alignment:
Q  179 aaggtgaataaatgggatgttcggggttcgaaccccga 216  Q
    ||||||||||||||||| ||||||||||||||| ||||    
T  7889342 aaggtgaataaatgggacgttcggggttcgaacaccga 7889305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 219
Target Start/End: Original strand, 17115558 - 17115595
Alignment:
Q  182 gtgaataaatgggatgttcggggttcgaaccccgacct 219  Q
    ||||||||||||||||| |||||||||||| |||||||    
T  17115558 gtgaataaatgggatgtccggggttcgaactccgacct 17115595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 181 - 218
Target Start/End: Complemental strand, 41699184 - 41699147
Alignment:
Q  181 ggtgaataaatgggatgttcggggttcgaaccccgacc 218  Q
    ||||||||| |||| |||||||||||||||||||||||    
T  41699184 ggtgaataagtggggtgttcggggttcgaaccccgacc 41699147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 218
Target Start/End: Original strand, 14307688 - 14307744
Alignment:
Q  162 tagaattcaccattttaaaggtgaataaatgggatgttcggggttcgaaccccgacc 218  Q
    ||||||||||  |||| || |||||||| |||| ||||||||||||||||| |||||    
T  14307688 tagaattcactttttttaaagtgaataagtggggtgttcggggttcgaacctcgacc 14307744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 212
Target Start/End: Complemental strand, 43684365 - 43684329
Alignment:
Q  176 ttaaaggtgaataaatgggatgttcggggttcgaacc 212  Q
    |||||||||||||| |||| |||||||||||||||||    
T  43684365 ttaaaggtgaataagtggggtgttcggggttcgaacc 43684329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 162 - 222
Target Start/End: Original strand, 37986861 - 37986921
Alignment:
Q  162 tagaattcaccattttaaaggtgaataaatgggatgttcggggttcgaaccccgacctctg 222  Q
    ||||||||||| |||| ||||||||||| |||||||| |||||||| ||| ||||||||||    
T  37986861 tagaattcacctttttcaaggtgaataagtgggatgtccggggttcaaactccgacctctg 37986921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 173 - 222
Target Start/End: Original strand, 15106892 - 15106941
Alignment:
Q  173 attttaaaggtgaataaatgggatgttcggggttcgaaccccgacctctg 222  Q
    ||||||||| ||||||| |||| ||| |||||||||||||||||||||||    
T  15106892 attttaaagatgaataagtggggtgtccggggttcgaaccccgacctctg 15106941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 162 - 215
Target Start/End: Complemental strand, 28537236 - 28537183
Alignment:
Q  162 tagaattcaccattttaaaggtgaataaatgggatgttcggggttcgaaccccg 215  Q
    |||||||||||||||| || |||||||| |||| ||| ||||||||||||||||    
T  28537236 tagaattcaccattttcaaagtgaataagtggggtgtccggggttcgaaccccg 28537183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 162 - 218
Target Start/End: Complemental strand, 31556919 - 31556863
Alignment:
Q  162 tagaattcaccattttaaaggtgaataaatgggatgttcggggttcgaaccccgacc 218  Q
    ||||||||||| |||| ||||||||||| |||| ||| |||||||||||| ||||||    
T  31556919 tagaattcacccttttcaaggtgaataagtggggtgtccggggttcgaactccgacc 31556863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 179 - 218
Target Start/End: Complemental strand, 18872605 - 18872566
Alignment:
Q  179 aaggtgaataaatgggatgttcggggttcgaaccccgacc 218  Q
    ||||||||||| |||| |||||||||||||||||||||||    
T  18872605 aaggtgaataagtggggtgttcggggttcgaaccccgacc 18872566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 215
Target Start/End: Original strand, 3535929 - 3535983
Alignment:
Q  161 ttagaattcaccattttaaaggtgaataaatgggatgttcggggttcgaaccccg 215  Q
    |||||||||||  |||| ||||||||||| |||| ||| ||||||||||||||||    
T  3535929 ttagaattcactttttttaaggtgaataagtggggtgtccggggttcgaaccccg 3535983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 207
Target Start/End: Original strand, 22687874 - 22687920
Alignment:
Q  161 ttagaattcaccattttaaaggtgaataaatgggatgttcggggttc 207  Q
    |||||||||||| |||| ||||||||||| |||| ||||||||||||    
T  22687874 ttagaattcacctttttcaaggtgaataagtggggtgttcggggttc 22687920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 215
Target Start/End: Complemental strand, 29561750 - 29561696
Alignment:
Q  161 ttagaattcaccattttaaaggtgaataaatgggatgttcggggttcgaaccccg 215  Q
    |||||||||||| |||| ||| ||||||| ||||||||  |||||||||||||||    
T  29561750 ttagaattcacctttttcaagatgaataagtgggatgtctggggttcgaaccccg 29561696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 207
Target Start/End: Complemental strand, 39760176 - 39760130
Alignment:
Q  162 tagaattcaccatttta-aaggtgaataaatgggatgttcggggttc 207  Q
    ||||||||||| | ||| |||||||||||||||||||||||||||||    
T  39760176 tagaattcaccttattataaggtgaataaatgggatgttcggggttc 39760130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 216
Target Start/End: Original strand, 42260714 - 42260768
Alignment:
Q  162 tagaattcaccattttaaaggtgaataaatgggatgttcggggttcgaaccccga 216  Q
    ||||||||| | |||||||||||||||| |||||||| ||| ||||||| |||||    
T  42260714 tagaattcatctttttaaaggtgaataagtgggatgtccggagttcgaaacccga 42260768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 161 - 218
Target Start/End: Complemental strand, 8934883 - 8934826
Alignment:
Q  161 ttagaattcaccattttaaaggtgaataaatgggatgttcggggttcgaaccccgacc 218  Q
    |||||||| ||| |||||||||||||||| |||| | | ||||| |||||||||||||    
T  8934883 ttagaatttacctttttaaaggtgaataagtggggtatccggggctcgaaccccgacc 8934826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 161 - 218
Target Start/End: Original strand, 38129006 - 38129063
Alignment:
Q  161 ttagaattcaccattttaaaggtgaataaatgggatgttcggggttcgaaccccgacc 218  Q
    |||||||||| |||||| ||||||||||| |||  ||| | |||||||||||||||||    
T  38129006 ttagaattcatcattttcaaggtgaataagtggagtgtccagggttcgaaccccgacc 38129063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 161 - 206
Target Start/End: Complemental strand, 39684340 - 39684295
Alignment:
Q  161 ttagaattcaccattttaaaggtgaataaatgggatgttcggggtt 206  Q
    |||||||||||| |||| ||||||||||| |||||||| |||||||    
T  39684340 ttagaattcaccttttttaaggtgaataagtgggatgtccggggtt 39684295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 217
Target Start/End: Original strand, 3102144 - 3102176
Alignment:
Q  185 aataaatgggatgttcggggttcgaaccccgac 217  Q
    |||||||||| ||||||||||||||||||||||    
T  3102144 aataaatggggtgttcggggttcgaaccccgac 3102176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 214
Target Start/End: Original strand, 22396982 - 22397034
Alignment:
Q  162 tagaattcaccattttaaaggtgaataaatgggatgttcggggttcgaacccc 214  Q
    ||||||||||| |||| ||| ||||||| |||| ||| |||||||||||||||    
T  22396982 tagaattcacccttttcaagatgaataagtggggtgtccggggttcgaacccc 22397034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 218
Target Start/End: Complemental strand, 27006441 - 27006385
Alignment:
Q  162 tagaattcaccattttaaaggtgaataaatgggatgttcggggttcgaaccccgacc 218  Q
    ||||||||||| |||| ||||||||||| |||  ||| ||| |||||||||||||||    
T  27006441 tagaattcacctttttcaaggtgaataagtggagtgtccggagttcgaaccccgacc 27006385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 215
Target Start/End: Original strand, 32158425 - 32158461
Alignment:
Q  179 aaggtgaataaatgggatgttcggggttcgaaccccg 215  Q
    ||||||||||| |||| ||||||||||||||||||||    
T  32158425 aaggtgaataagtggggtgttcggggttcgaaccccg 32158461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 218
Target Start/End: Complemental strand, 34010636 - 34010580
Alignment:
Q  162 tagaattcaccattttaaaggtgaataaatgggatgttcggggttcgaaccccgacc 218  Q
    ||||||||||| | |  |||||||||||||| ||||| |||||||||||| ||||||    
T  34010636 tagaattcaccttatataaggtgaataaatgagatgtccggggttcgaactccgacc 34010580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 214
Target Start/End: Complemental strand, 40384352 - 40384300
Alignment:
Q  162 tagaattcaccattttaaaggtgaataaatgggatgttcggggttcgaacccc 214  Q
    ||||||||||| |||| ||||||||||| |||| ||| ||| |||||||||||    
T  40384352 tagaattcaccttttttaaggtgaataagtggggtgtccggagttcgaacccc 40384300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 162 - 218
Target Start/End: Complemental strand, 24039985 - 24039929
Alignment:
Q  162 tagaattcaccattttaaaggtgaataaatgggatgttcggggttcgaaccccgacc 218  Q
    ||||||||||| |||| ||||||||||| || | |||||||||||||||||||||||    
T  24039985 tagaattcacctttttcaaggtgaataagtgaggtgttcggggttcgaaccccgacc 24039929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 162 - 215
Target Start/End: Complemental strand, 20610840 - 20610787
Alignment:
Q  162 tagaattcaccattttaaaggtgaataaatgggatgttcggggttcgaaccccg 215  Q
    ||||||||||| |||| ||||||||||| |||||||| ||| ||||||||||||    
T  20610840 tagaattcaccttttttaaggtgaataagtgggatgtccggagttcgaaccccg 20610787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 162 - 214
Target Start/End: Original strand, 49039439 - 49039491
Alignment:
Q  162 tagaattcaccattttaaaggtgaataaatgggatgttcggggttcgaacccc 214  Q
    ||||||||||| |||| ||||||||||| |||| ||| |||||||||||||||    
T  49039439 tagaattcacctttttcaaggtgaataagtggggtgtccggggttcgaacccc 49039491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 179 - 222
Target Start/End: Original strand, 35909175 - 35909217
Alignment:
Q  179 aaggtgaataaatgggatgttcggggttcgaaccccgacctctg 222  Q
    ||||||||||||||||| || |||||||||||||||||||||||    
T  35909175 aaggtgaataaatggga-gtccggggttcgaaccccgacctctg 35909217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 218
Target Start/End: Complemental strand, 16556538 - 16556496
Alignment:
Q  176 ttaaaggtgaataaatgggatgttcggggttcgaaccccgacc 218  Q
    |||||| ||||||| |||| |||||||||||||||||||||||    
T  16556538 ttaaagatgaataagtggggtgttcggggttcgaaccccgacc 16556496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 218
Target Start/End: Complemental strand, 56555635 - 56555593
Alignment:
Q  176 ttaaaggtgaataaatgggatgttcggggttcgaaccccgacc 218  Q
    |||||||||||||| |||| |||||| ||||||||||||||||    
T  56555635 ttaaaggtgaataagtggggtgttcgaggttcgaaccccgacc 56555593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 161 - 214
Target Start/End: Original strand, 21023345 - 21023398
Alignment:
Q  161 ttagaattcaccattttaaaggtgaataaatgggatgttcggggttcgaacccc 214  Q
    |||||||||||| |||| ||||||||||| |||| |||  ||||||||||||||    
T  21023345 ttagaattcacctttttcaaggtgaataagtggggtgtcgggggttcgaacccc 21023398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 210
Target Start/End: Original strand, 1589152 - 1589199
Alignment:
Q  162 tagaattcaccattttaaaggtgaataaatgggatgttcggggttcgaa 210  Q
    ||||||||||| |||||| | |||||||||||||||| |||||||||||    
T  1589152 tagaattcacctttttaa-gatgaataaatgggatgtccggggttcgaa 1589199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 218
Target Start/End: Complemental strand, 22751090 - 22751054
Alignment:
Q  182 gtgaataaatgggatgttcggggttcgaaccccgacc 218  Q
    ||||||||||||| ||||||||||| |||||||||||    
T  22751090 gtgaataaatggggtgttcggggtttgaaccccgacc 22751054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 214
Target Start/End: Complemental strand, 27296903 - 27296871
Alignment:
Q  182 gtgaataaatgggatgttcggggttcgaacccc 214  Q
    ||||||||||| |||||||||||||||||||||    
T  27296903 gtgaataaatgagatgttcggggttcgaacccc 27296871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 218
Target Start/End: Complemental strand, 33359918 - 33359862
Alignment:
Q  162 tagaattcaccattttaaaggtgaataaatgggatgttcggggttcgaaccccgacc 218  Q
    ||||||||||| |||| ||||||||||| |||| ||| | ||||||||||| |||||    
T  33359918 tagaattcacctttttcaaggtgaataagtggggtgtccagggttcgaacctcgacc 33359862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 215
Target Start/End: Complemental strand, 36008359 - 36008323
Alignment:
Q  179 aaggtgaataaatgggatgttcggggttcgaaccccg 215  Q
    ||||||||||| |||| ||||||||||||||||||||    
T  36008359 aaggtgaataagtggggtgttcggggttcgaaccccg 36008323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 218
Target Start/End: Complemental strand, 36954218 - 36954182
Alignment:
Q  182 gtgaataaatgggatgttcggggttcgaaccccgacc 218  Q
    ||||||||||||| ||| |||||||||||||||||||    
T  36954218 gtgaataaatggggtgtccggggttcgaaccccgacc 36954182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 214
Target Start/End: Original strand, 54854173 - 54854225
Alignment:
Q  162 tagaattcaccattttaaaggtgaataaatgggatgttcggggttcgaacccc 214  Q
    ||||||||||  |||| ||||||||||| || ||||| |||||||||||||||    
T  54854173 tagaattcacttttttcaaggtgaataagtgtgatgtccggggttcgaacccc 54854225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.00000000008; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 161 - 219
Target Start/End: Original strand, 4604346 - 4604404
Alignment:
Q  161 ttagaattcaccattttaaaggtgaataaatgggatgttcggggttcgaaccccgacct 219  Q
    |||||||||| | |||| ||||||||||| |||  ||||||||||||||||||||||||    
T  4604346 ttagaattcatcttttttaaggtgaataagtggagtgttcggggttcgaaccccgacct 4604404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 161 - 222
Target Start/End: Original strand, 220355 - 220416
Alignment:
Q  161 ttagaattcaccattttaaaggtgaataaatgggatgttcggggttcgaaccccgacctctg 222  Q
    |||||||||||| |||| ||||||||||| |||| ||| |||| ||||||||| ||||||||    
T  220355 ttagaattcacctttttcaaggtgaataagtggggtgtccgggattcgaaccctgacctctg 220416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 161 - 222
Target Start/End: Original strand, 689510 - 689571
Alignment:
Q  161 ttagaattcaccattttaaaggtgaataaatgggatgttcggggttcgaaccccgacctctg 222  Q
    |||||||||||| |||| ||||||||||| |||| ||| |||| ||||||||| ||||||||    
T  689510 ttagaattcacctttttcaaggtgaataagtggggtgtccgggattcgaaccctgacctctg 689571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 161 - 222
Target Start/End: Original strand, 733978 - 734039
Alignment:
Q  161 ttagaattcaccattttaaaggtgaataaatgggatgttcggggttcgaaccccgacctctg 222  Q
    |||||||||||| |||| ||||||||||| |||| ||| |||| ||||||||| ||||||||    
T  733978 ttagaattcacctttttcaaggtgaataagtggggtgtccgggattcgaaccctgacctctg 734039  T

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Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 161 - 222
Target Start/End: Original strand, 857874 - 857935
Alignment:
Q  161 ttagaattcaccattttaaaggtgaataaatgggatgttcggggttcgaaccccgacctctg 222  Q
    |||||||||||| |||| ||||||||||| |||| ||| |||| ||||||||| ||||||||    
T  857874 ttagaattcacctttttcaaggtgaataagtggggtgtccgggattcgaaccctgacctctg 857935  T

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Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 161 - 222
Target Start/End: Original strand, 26773695 - 26773756
Alignment:
Q  161 ttagaattcaccattttaaaggtgaataaatgggatgttcggggttcgaaccccgacctctg 222  Q
    |||||||||||  |||| ||| ||||||| ||| ||||||||||||||||| ||||||||||    
T  26773695 ttagaattcacattttttaagatgaataagtggaatgttcggggttcgaactccgacctctg 26773756  T

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Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 179 - 216
Target Start/End: Complemental strand, 30542848 - 30542811
Alignment:
Q  179 aaggtgaataaatgggatgttcggggttcgaaccccga 216  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  30542848 aaggtgaataaatggaatgttcggggttcgaaccccga 30542811  T

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Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 162 - 215
Target Start/End: Complemental strand, 37524040 - 37523987
Alignment:
Q  162 tagaattcaccattttaaaggtgaataaatgggatgttcggggttcgaaccccg 215  Q
    ||||||||||| |||||||||||||||||||   |||| |||||||||||||||    
T  37524040 tagaattcacctttttaaaggtgaataaatgatgtgtttggggttcgaaccccg 37523987  T

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Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 162 - 218
Target Start/End: Original strand, 25470840 - 25470896
Alignment:
Q  162 tagaattcaccattttaaaggtgaataaatgggatgttcggggttcgaaccccgacc 218  Q
    ||||||||||| | || |||||||||||||||| ||| || ||||||||||||||||    
T  25470840 tagaattcaccttcttcaaggtgaataaatggggtgtccgaggttcgaaccccgacc 25470896  T

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Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 175 - 218
Target Start/End: Complemental strand, 10201350 - 10201307
Alignment:
Q  175 tttaaaggtgaataaatgggatgttcggggttcgaaccccgacc 218  Q
    |||||||||||||||||| | ||| |||||||||||||||||||    
T  10201350 tttaaaggtgaataaatgaggtgtccggggttcgaaccccgacc 10201307  T

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Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 179 - 218
Target Start/End: Complemental strand, 14683960 - 14683921
Alignment:
Q  179 aaggtgaataaatgggatgttcggggttcgaaccccgacc 218  Q
    ||||||||||| |||||||| |||||||||||||||||||    
T  14683960 aaggtgaataagtgggatgtccggggttcgaaccccgacc 14683921  T

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Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 183 - 218
Target Start/End: Original strand, 25139902 - 25139937
Alignment:
Q  183 tgaataaatgggatgttcggggttcgaaccccgacc 218  Q
    ||||||| ||||||||||||||||||||||||||||    
T  25139902 tgaataagtgggatgttcggggttcgaaccccgacc 25139937  T

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Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 218
Target Start/End: Original strand, 19925095 - 19925149
Alignment:
Q  164 gaattcaccattttaaaggtgaataaatgggatgttcggggttcgaaccccgacc 218  Q
    ||||||||| |||| ||||||||||| || | |||||||| ||||||||||||||    
T  19925095 gaattcaccttttttaaggtgaataagtgaggtgttcgggattcgaaccccgacc 19925149  T

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Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 215
Target Start/End: Complemental strand, 8034614 - 8034578
Alignment:
Q  179 aaggtgaataaatgggatgttcggggttcgaaccccg 215  Q
    ||||||||||| |||| ||||||||||||||||||||    
T  8034614 aaggtgaataagtggggtgttcggggttcgaaccccg 8034578  T

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Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 216
Target Start/End: Original strand, 41845437 - 41845477
Alignment:
Q  176 ttaaaggtgaataaatgggatgttcggggttcgaaccccga 216  Q
    |||||| ||||||||| || |||||||||||||||||||||    
T  41845437 ttaaagatgaataaatagggtgttcggggttcgaaccccga 41845477  T

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Target: scaffold0002 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 215
Target Start/End: Complemental strand, 440501 - 440447
Alignment:
Q  161 ttagaattcaccattttaaaggtgaataaatgggatgttcggggttcgaaccccg 215  Q
    |||||||||||| |||| ||||||||||| |||| ||||||||  ||||||||||    
T  440501 ttagaattcaccttttttaaggtgaataagtggggtgttcgggagtcgaaccccg 440447  T

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Target: scaffold0119 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 214
Target Start/End: Complemental strand, 1140 - 1088
Alignment:
Q  162 tagaattcaccattttaaaggtgaataaatgggatgttcggggttcgaacccc 214  Q
    ||||||||||| |||| ||||||||||| |||| |||  ||||||||||||||    
T  1140 tagaattcacctttttcaaggtgaataagtggggtgtctggggttcgaacccc 1088  T

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Target: scaffold0039 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 215
Target Start/End: Complemental strand, 101915 - 101879
Alignment:
Q  179 aaggtgaataaatgggatgttcggggttcgaaccccg 215  Q
    ||||||||||| ||||||||| |||||||||||||||    
T  101915 aaggtgaataagtgggatgtttggggttcgaaccccg 101879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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