View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5486_high_3 (Length: 507)
Name: NF5486_high_3
Description: NF5486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5486_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 466; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 466; E-Value: 0
Query Start/End: Original strand, 2 - 479
Target Start/End: Original strand, 48171768 - 48172245
Alignment:
| Q |
2 |
gtgttttgcgctagttgctgtaatagactttttatcctcatgaacaaaacgctcttcatcagaactatggctgtcattatcatcttcgctctccctttca |
101 |
Q |
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| T |
48171768 |
gtgttttgcgctagttgctgtaatagactttttatcctcatgaacagaacgctcttcatcggaactatggctgtcattatcatcttcgctctcactttca |
48171867 |
T |
|
| Q |
102 |
tcggcagtggcaacactcttttgggaggtacaattgggaggtggaagaggtgcaggaacagcttctggaggaggagaagtggaaagaaaactcaaagcag |
201 |
Q |
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| T |
48171868 |
tcggcagtggcaacactcttttgggaggtacaattgggaggtggaagaggtgcaggaacagcttctggaggaggagaagtggaaagaaaactcaaagcag |
48171967 |
T |
|
| Q |
202 |
ttacaacatcactcatcaaaggacgcgctgctgattcctcttgtaagcacatggctgcaattgcaacaacttgattcagatccttttctggataattttt |
301 |
Q |
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| T |
48171968 |
ttacaacatcactcatcaaaggacgcgctgctgattcctcttgtaagcacatggctgcaattgcaacaacttgattcagatccttttctggataattttt |
48172067 |
T |
|
| Q |
302 |
attcagatttggatctgccatatctccatatcttttaggatctctaaatattggttgtgcctgctcagcagttacaagtataaaattatcaaaacagata |
401 |
Q |
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| T |
48172068 |
attcagatttggatctgccatatctccatatcttttaggatctctaaatattggttgtgcctgctcagcagttacaagtataaaattatcaaaacagata |
48172167 |
T |
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| Q |
402 |
caagagaatcaaagatattgcttaaaatattagtttatatcatactggagaaattgcacttaggaaagctcccaaaat |
479 |
Q |
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| T |
48172168 |
caagagaatcaaagatattgcttaaaatattagtttatatcatactggagaaattgcacttaggaaagctcccaaaat |
48172245 |
T |
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Back To:
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Target: chr1 (Bit Score: 63; Significance: 4e-27; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 180 - 326
Target Start/End: Complemental strand, 35288547 - 35288401
Alignment:
| Q |
180 |
gtggaaagaaaactcaaagcagttacaacatcactcatcaaaggacgcgctgctgattcctcttgtaagcacatggctgcaattgcaacaacttgattca |
279 |
Q |
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|||||||||||||||| ||| || ||||| || | ||||||||||| ||| ||| |||||||||||||||||||||||| ||||||||| ||||||| | |
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| T |
35288547 |
gtggaaagaaaactcagagcggtcacaacgtcgccgatcaaaggacgagcttctggttcctcttgtaagcacatggctgctattgcaacagcttgattaa |
35288448 |
T |
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| Q |
280 |
gatccttttctggataatttttattcagatttggatctgccatatct |
326 |
Q |
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| T |
35288447 |
gatccttttctgggaattgtttgttgagaagtggatctgccatatct |
35288401 |
T |
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