View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5486_high_5 (Length: 374)
Name: NF5486_high_5
Description: NF5486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5486_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 20 - 358
Target Start/End: Complemental strand, 54634811 - 54634473
Alignment:
| Q |
20 |
taatttctatctatctttgatactaagatatggttatggcacataatagcatttccctcaatatattattctctaacaaaaatctacattttggagataa |
119 |
Q |
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| T |
54634811 |
taatttctatctatctttgatactaagatatggttatggcacataatagcatttccctcaatatattattctctaacaaaaatctacattttggagataa |
54634712 |
T |
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| Q |
120 |
taatgaaacgaatattgctggaattatgaattgcagaagaatagtatgaagaaataaactttggcggttttttgaagagaagcgtgtaattgaaggaaat |
219 |
Q |
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| T |
54634711 |
taatgaaacgaatattgctggaattatgaattgcagaagaatagtatgaagaaataaactttggcggttttttgaagagaagcgtgtaattgaaggaaat |
54634612 |
T |
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| Q |
220 |
gaaaaatgagaaagaaagtaccgtaaactctgtcgcagatctcgaggagaccatcaggaggcttacgatagaacaacttgcggagcatagccatgtccga |
319 |
Q |
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| T |
54634611 |
gaaaaatgagaaagaaagtaccgtaaactctgtcgcagatctcgaggagaccatcaggaggcttacgatagaacaacttgcggagcatagccatgtccgc |
54634512 |
T |
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| Q |
320 |
gaagaagctttcagattcgagaaaattttgatatggtgg |
358 |
Q |
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| T |
54634511 |
gaagaagctttcagattcgagaaaattttgatttggtgg |
54634473 |
T |
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