View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5486_high_6 (Length: 345)
Name: NF5486_high_6
Description: NF5486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5486_high_6 |
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| [»] scaffold0264 (1 HSPs) |
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Alignment Details
Target: scaffold0264 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: scaffold0264
Description:
Target: scaffold0264; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 18 - 328
Target Start/End: Complemental strand, 14533 - 14223
Alignment:
| Q |
18 |
tatgggatttgaaatgatgtaatttgtactttgtttatatacctctatcattgcaaatnnnnnnnnnnnnnnnnctccatggcttgctcgaatattttct |
117 |
Q |
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| T |
14533 |
tatgggatttgaaatgatgtaatttgtactttgtttatatacctctatcattgcaaataaaaaataaaagaaaactccatggcttgctcgaatattttct |
14434 |
T |
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| Q |
118 |
ttttctctatccttgtttgtttcctctattttgccactatcaatgcacaatgacatatacgagagaagaatgtctcagcgtggaagacaatgatttccca |
217 |
Q |
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| T |
14433 |
ttttctctatccttgtttgtttcctctattttgccactatcaatgtacaatgacatatacgagagaagaatgtctcagcgtggaagacaatgatttccca |
14334 |
T |
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| Q |
218 |
ttcttttgctcttcgtggattaggttggacggcttttaattactttttaatgatagaaacaggtggagtaagaactattgtcgcctcgtgctcattctgg |
317 |
Q |
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| T |
14333 |
ttcttttgctctccgtggattaggttggacggcttttaattactttttaatgatagaaacaggtggagtaagaactattgtcgcctcgtgctcattctgg |
14234 |
T |
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| Q |
318 |
tttagtcgagc |
328 |
Q |
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| T |
14233 |
tttagtcgagc |
14223 |
T |
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Target: chr6 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 93 - 167
Target Start/End: Complemental strand, 20238810 - 20238736
Alignment:
| Q |
93 |
tccatggcttgctcgaatattttctttttctctatccttgtttgtttcctctattttgccactatcaatgcacaa |
167 |
Q |
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| T |
20238810 |
tccatggcttcctctaaaattttctttttctctatgtttgttagtttcttctattttgccactattaaggcacaa |
20238736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 93 - 167
Target Start/End: Complemental strand, 22132794 - 22132720
Alignment:
| Q |
93 |
tccatggcttgctcgaatattttctttttctctatccttgtttgtttcctctattttgccactatcaatgcacaa |
167 |
Q |
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| T |
22132794 |
tccatggcttcctctaaaattttctttttctctatgtttgttagtttcttctattttgccactattaaggcacaa |
22132720 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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