View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5486_low_1 (Length: 592)
Name: NF5486_low_1
Description: NF5486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5486_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 512; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 512; E-Value: 0
Query Start/End: Original strand, 17 - 584
Target Start/End: Complemental strand, 40521346 - 40520784
Alignment:
| Q |
17 |
aagaatcggatgtgatagatgtaaaaaatcattgtaaatttgaaaatatatgtacaaatagatatatcacacatagaattgtatattgtatatctattgc |
116 |
Q |
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| T |
40521346 |
aagaatcggatgtgatagatgtgaaaaatcattgtaaatttgaaaatatatgtacaaatagatatatcacacatagaattgtatattgtatatctattgc |
40521247 |
T |
|
| Q |
117 |
attctctatcctaagaaaatgaatgtttattagtgagtaactttttattatttgattaacaaggtttatatgttagttggggttgaatttttgccattga |
216 |
Q |
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| T |
40521246 |
attctctatcctaagaaaatgaatttttattagtgagtaactttttattgtttgattaacaaggtttatatgttagttggggttgaatttttgccattga |
40521147 |
T |
|
| Q |
217 |
atgaattatcagcctttgaatggtagatgaaaggtttgacttgttgaaagcaagttattcaacatttacatatttattgaatggtagaactgaagaagca |
316 |
Q |
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| T |
40521146 |
atgaattatcagcctttgaatggtagatgaaaggtttgacttgttgaaagcaagttattcaacatttacatatttattgaatggtagaactgaagaagca |
40521047 |
T |
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| Q |
317 |
gccgttgtaacttgtaagtaggtaatggatccaccacctcctcctcctttgagcacaccgttgctaggtccagctccccctatcagcggattcttggatt |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40521046 |
gccgttgtaacttgtaagtaggtaatggatccaccacctcctcctcctttgagcacaccgttgctaggtccagctccccctatcagcggattcttggatt |
40520947 |
T |
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| Q |
417 |
cttggtaagtcacttctttttgctcgggttttgcaaccgtatatttttccataaccatgttttcctgttaaactaagcaatatgagaaagaaaggnnnnn |
516 |
Q |
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| T |
40520946 |
cttggtaagtcacttctttttgctcgagttttgcaaccgtatatttttccataaccatgttttcctgttaaactaagcaatatgagaaagaaa-----aa |
40520852 |
T |
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| Q |
517 |
nngatgaaataattgaccatgtatttgttctcttgattttatgtcttccagcttatggtttctctgct |
584 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
40520851 |
aatatgaaataattgaccatgtatttgttctcttgattttatgtcttccagcttatggtttctatgct |
40520784 |
T |
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