View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5486_low_17 (Length: 223)
Name: NF5486_low_17
Description: NF5486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5486_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 14 - 206
Target Start/End: Complemental strand, 46667302 - 46667110
Alignment:
| Q |
14 |
gcagagaggagtgtagttgcaatcctgtacgatatttttgcattgtgtcaatgcaaagatctgggagtggttggtttgaaacatttttgaatagtcatat |
113 |
Q |
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| T |
46667302 |
gcagagaggagtgtagttgcaatcctgtacgatatttttgcattgtgtcaatgcaaagatctgggagtggttggtttgaaacatttttgaatagtcatat |
46667203 |
T |
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| Q |
114 |
taacgtaagctcaaatggagaaatattttcagttgagaaaagaagggaaaatgtttctttaattttgaagactataaatgaagtgtataatct |
206 |
Q |
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| T |
46667202 |
taacgtaagctcaaatggagaaatattttcagttgagaaaagaagggaaaatgtttctttaattttgaagactataaatgaagtgtataatct |
46667110 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 59 - 143
Target Start/End: Complemental strand, 44195520 - 44195436
Alignment:
| Q |
59 |
tgtcaatgcaaagatctgggagtggttggtttgaaacatttttgaatagtcatattaacgtaagctcaaatggagaaatattttc |
143 |
Q |
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| T |
44195520 |
tgtcgatgcagagatttgggagtggatggcatgagacgtttttaaatagtcatcctaacataagctcaaatggagaaatcttttc |
44195436 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 61 - 185
Target Start/End: Original strand, 6116961 - 6117085
Alignment:
| Q |
61 |
tcaatgcaaagatctgggagtggttggtttgaaacatttttgaatagtcatattaacgtaagctcaaatggagaaatattttcagttgagaaaagaaggg |
160 |
Q |
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| T |
6116961 |
tcaatgcaaagatctgggagtgggtggtttgagacacttttgaatagtcacattaatataagttccaatggggagatattttctgtacccaaaagaaggg |
6117060 |
T |
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| Q |
161 |
aaaatgtttctttaattttgaagac |
185 |
Q |
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| T |
6117061 |
aaaatatttcatcaattttgaagac |
6117085 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 59 - 143
Target Start/End: Original strand, 33930146 - 33930230
Alignment:
| Q |
59 |
tgtcaatgcaaagatctgggagtggttggtttgaaacatttttgaatagtcatattaacgtaagctcaaatggagaaatattttc |
143 |
Q |
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| T |
33930146 |
tgtcgatgcagagatctgggagtggatggtttgagacgtttttaaatagtcatcctaacataagctcaaatggggaaatcttttc |
33930230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 70 - 186
Target Start/End: Original strand, 6521792 - 6521908
Alignment:
| Q |
70 |
agatctgggagtggttggtttgaaacatttttgaatagtcatattaacgtaagctcaaatggagaaatattttcagtt-gagaaaagaagggaaaatgtt |
168 |
Q |
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| T |
6521792 |
agatctggcagtgggtggtttgagacccttttgaatagtcacattaatgtaagctcgaacggcgagatattttctgttagag-aaagaaggcaaaatgct |
6521890 |
T |
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| Q |
169 |
tctttaattttgaagact |
186 |
Q |
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| T |
6521891 |
tcttcaattttgcagact |
6521908 |
T |
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