View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5486_low_4 (Length: 447)
Name: NF5486_low_4
Description: NF5486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5486_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 395; Significance: 0; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 16 - 430
Target Start/End: Complemental strand, 30056745 - 30056331
Alignment:
| Q |
16 |
ctgtgggtgcactggaaggtatcgaacaaataactagtggaaatttagtgtccctttctgaacaagaacttgtggatcatgtcagaagtaattggacaaa |
115 |
Q |
| |
|
||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
30056745 |
ctgtgggtgcactagaaggtatccaacaaataactagtggaaatttagtgtccctttctgaacaagaacttgtggatcgtgtcagaagtaattggacaaa |
30056646 |
T |
|
| Q |
116 |
tggatgcaacggtggttatttgattgatgcttttgaattcgtcttagtaaacggtggaattgccacagaagcaagttatccgtacagaggagttaaagga |
215 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30056645 |
tggatgcaacggtggttatttgattgatgcttttgaattcgtcttagaaaacggtggaattgccacagaagcaagttatccgtacagaggagttaaagga |
30056546 |
T |
|
| Q |
216 |
aataatagtaagaaggttcgtcgccaagttcagattaagagctacgagcaagtccctagaaatagtgaggattcactgcttaaagttgtggccaatcaac |
315 |
Q |
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|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30056545 |
aataatagtaagaaggttagtcgccaagttcagattaagagctacgagcaagtccctagaaatagtgaggattcactgcttaaagttgtggccaatcaac |
30056446 |
T |
|
| Q |
316 |
cggtttccgttggtatcgatataagtggtatgatcagattttactcaagtggaatatttacaggagaatgtggaactaagccaaaccatgctgtaataat |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30056445 |
cggtttccgttggtatcgatataagtggtatgatcagattttactcaagtggaatatttacaggagaatgtggaactaagccaaaccatgctgtaataat |
30056346 |
T |
|
| Q |
416 |
agttggttatggtac |
430 |
Q |
| |
|
||||||||||||||| |
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|
| T |
30056345 |
agttggttatggtac |
30056331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 30 - 430
Target Start/End: Original strand, 29746565 - 29746962
Alignment:
| Q |
30 |
gaaggtatcgaacaaataactagtggaaatttagtgtccctttctgaacaagaacttgtggatcatgtcagaagtaattggacaaatggatgcaacggtg |
129 |
Q |
| |
|
||||||||| |||||||||| |||||||||||||| ||| |||| || ||| ||||||||||| |||| |||||||||||| |||||||| || |||| |
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| T |
29746565 |
gaaggtatccaacaaataaccagtggaaatttagtctccttttcagagcaacaacttgtggattgtgtcgcaagtaattggaccaatggatgtaatggtg |
29746664 |
T |
|
| Q |
130 |
gttatttgattgatgcttttgaattcgtcttagtaaacggtggaattgccacagaagcaagttatccgtacagaggagttaaaggaaataatagtaagaa |
229 |
Q |
| |
|
|| || ||||||||||||| ||||| |||| ||||||||||||||||||||||||||||||||| |||| |||||||||||||||| ||||||| |
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| T |
29746665 |
gtaataagattgatgcttttaaattcaatttagaaaacggtggaattgccacagaagcaagttatccatacaagggagttaaaggaaata---gtaagaa |
29746761 |
T |
|
| Q |
230 |
ggttcgtcgccaagttcagattaagagctacgagcaagtccctagaaatagtgaggattcactgcttaaagttgtggccaatcaaccggtttccgttggt |
329 |
Q |
| |
|
||| | || |||||||||||||||| |||||||||||||||||| |||||| ||||| ||||| ||||||||||||||||||||||||||||| ||| | |
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|
| T |
29746762 |
ggtgcatcaccaagttcagattaagggctacgagcaagtccctaaaaatagcgaggactcactacttaaagttgtggccaatcaaccggtttcggttaat |
29746861 |
T |
|
| Q |
330 |
atcgatataagtggtatgatcagattttactcaagtggaatatttacaggagaatgtggaactaagccaaaccatgctgtaataatagttggttatggta |
429 |
Q |
| |
|
|| ||||| || |||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| |
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|
| T |
29746862 |
attgatatgagaggtatgctcaaattttactcaagtggaatatttacaggagaatgtggaactaagccaaaccatgctgtaacaatagttggctatggta |
29746961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 30 - 430
Target Start/End: Complemental strand, 29733667 - 29733267
Alignment:
| Q |
30 |
gaaggtatcgaacaaataactagtggaaatttagtgtccctttctgaacaagaacttgtggatcatgtcagaagtaattggacaaatggatgcaacggtg |
129 |
Q |
| |
|
||||||||| || |||||||||||||||||||||| |||||||| || || ||||||||||| || |||||| | |||| || ||||| | | |
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|
| T |
29733667 |
gaaggtatccaaaaaataactagtggaaatttagtttccctttcagagcagcaacttgtggattgtgatagaagtggtcggactaaaggatgtgataacg |
29733568 |
T |
|
| Q |
130 |
gttatttgattgatgcttttgaattcgtcttagtaaacggtggaattgccacagaagcaagttatccgtaca---gaggagttaaaggaaataatagtaa |
226 |
Q |
| |
|
|| || ||||| |||||||| ||||| | |||| ||| ||||||||||| |||||||||| |||||| |||| ||| |||||||||| | |||| |
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|
| T |
29733567 |
gtaatatgattaatgcttttaaattcattttagaaaatggtggaattgcgacagaagcaaattatccatacaagcgagttgttaaaggaactt---gtaa |
29733471 |
T |
|
| Q |
227 |
gaaggttcgtcgccaagttcagattaagagctacgagcaagtccctagaaatagtgaggattcactgcttaaagttgtggccaatcaaccggtttccgtt |
326 |
Q |
| |
|
||||| ||| | ||||||| ||||||||||| || |||||||||| |||||||| |||||||| ||||||| ||||||||||||||||||||| ||| |
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|
| T |
29733470 |
aaaggtaagtcacaaagttcaaattaagagctatgaagaagtccctagtaatagtgaagattcactacttaaagctgtggccaatcaaccggtttcggtt |
29733371 |
T |
|
| Q |
327 |
ggtatcgatataagtggtatgatcagattttactcaagtggaatatttacaggagaatgtggaactaagccaaaccatgctgtaataatagttggttatg |
426 |
Q |
| |
|
||||| ||||| || || ||| ||| |||||||||||||| || |||||||||||||||||||||||||||||||||||| ||| ||||||||||||| |
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|
| T |
29733370 |
ggtattgatatgagaggcatgttcaagttttactcaagtgggatttttacaggagaatgtggaactaagccaaaccatgctttaaccatagttggttatg |
29733271 |
T |
|
| Q |
427 |
gtac |
430 |
Q |
| |
|
|||| |
|
|
| T |
29733270 |
gtac |
29733267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 285 - 430
Target Start/End: Complemental strand, 29730076 - 29729931
Alignment:
| Q |
285 |
gattcactgcttaaagttgtggccaatcaaccggtttccgttggtatcgatataagtggtatgatcagattttactcaagtggaatatttacaggagaat |
384 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||| ||| |||| ||||| || || ||| ||| |||||||||||||| || ||||||||||||| |
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|
| T |
29730076 |
gattcactgcttaaagctgtggccaatcaaccggtttcggttagtattgatatgagaggcatgttcaagttttactcaagtgggatttttacaggagaat |
29729977 |
T |
|
| Q |
385 |
gtggaactaagccaaaccatgctgtaataatagttggttatggtac |
430 |
Q |
| |
|
|| |||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
29729976 |
gtagaactaagccaaaccatgctgtaacaatagttggttatggtac |
29729931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 30 - 212
Target Start/End: Complemental strand, 29606599 - 29606417
Alignment:
| Q |
30 |
gaaggtatcgaacaaataactagtggaaatttagtgtccctttctgaacaagaacttgtggatcatgtcagaagtaattggacaaatggatgcaacggtg |
129 |
Q |
| |
|
||||||||| ||||||||| |||||||||||||| ||| |||| || ||| ||||||||||| ||||| |||||||||||| |||||||| || |||| |
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|
| T |
29606599 |
gaaggtatccaacaaataatcagtggaaatttagtctccttttcagagcaacaacttgtggattgtgtcacaagtaattggaccaatggatgtaatggtg |
29606500 |
T |
|
| Q |
130 |
gttatttgattgatgcttttgaattcgtcttagtaaacggtggaattgccacagaagcaagttatccgtacagaggagttaaa |
212 |
Q |
| |
|
|| || ||||||||||||| ||||| | |||| ||||||||||||||||||||||||||||||||| |||| ||||||||| |
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|
| T |
29606499 |
gtaataagattgatgcttttaaattcattttagaaaacggtggaattgccacagaagcaagttatccatacaagggagttaaa |
29606417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 293 - 430
Target Start/End: Complemental strand, 30072992 - 30072851
Alignment:
| Q |
293 |
gcttaaagttgtggccaatcaaccggtttccgttggtatcgat----ataagtggtatgatcagattttactcaagtggaatatttacaggagaatgtgg |
388 |
Q |
| |
|
||||| || |||||| |||||||||||||| ||| |||| ||| || || |||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30072992 |
gcttatagctgtggctaatcaaccggtttcggttagtattgatgtttatgagaggtatgttcagattttactcaagtggaatatttacaggagaatgtgg |
30072893 |
T |
|
| Q |
389 |
aactaagccaaaccatgctgtaataatagttggttatggtac |
430 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
30072892 |
aactaagccaaaccatgctgtaacaatagttggttatggtac |
30072851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 335 - 430
Target Start/End: Complemental strand, 29935001 - 29934906
Alignment:
| Q |
335 |
tataagtggtatgatcagattttactcaagtggaatatttacaggagaatgtggaactaagccaaaccatgctgtaataatagttggttatggtac |
430 |
Q |
| |
|
|||||| |||||| ||||||||||||| |||||||||| ||||||||||||||||||| || |||||||||||||| ||||||||| |||||||| |
|
|
| T |
29935001 |
tataagaggtatgttcagattttactcgagtggaatatctacaggagaatgtggaactcagggaaaccatgctgtaacaatagttggctatggtac |
29934906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 204 - 299
Target Start/End: Complemental strand, 34759101 - 34759009
Alignment:
| Q |
204 |
ggagttaaaggaaataatagtaagaaggttcgtcgccaagttcagattaagagctacgagcaagtccctagaaatagtgaggattcactgcttaaa |
299 |
Q |
| |
|
||||||||||||||| ||||||| || ||| ||||||| |||||||||||| |||||||||||| |||||||||||||||||| |||||| |
|
|
| T |
34759101 |
ggagttaaaggaaatt---gtaagaatgtgtgtcaccaagtttggattaagagctataagcaagtccctaaaaatagtgaggattcactacttaaa |
34759009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 354 - 405
Target Start/End: Complemental strand, 31194252 - 31194201
Alignment:
| Q |
354 |
ttttactcaagtggaatatttacaggagaatgtggaactaagccaaaccatg |
405 |
Q |
| |
|
||||||||||||||||| | ||||||||||||||||||| ||| | |||||| |
|
|
| T |
31194252 |
ttttactcaagtggaatttatacaggagaatgtggaactgagctagaccatg |
31194201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 354 - 392
Target Start/End: Complemental strand, 31185425 - 31185387
Alignment:
| Q |
354 |
ttttactcaagtggaatatttacaggagaatgtggaact |
392 |
Q |
| |
|
||||||||||||||||| | ||||||||||||||||||| |
|
|
| T |
31185425 |
ttttactcaagtggaatttatacaggagaatgtggaact |
31185387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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