View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5486_low_7 (Length: 292)
Name: NF5486_low_7
Description: NF5486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5486_low_7 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 18 - 282
Target Start/End: Complemental strand, 33461790 - 33461526
Alignment:
| Q |
18 |
aaggttggattgggccacctcatgctcctcctcgtatgcctcccaccatgtttcgatgatccatctgcaattataatacatgcatcaatttagagttaat |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
33461790 |
aaggttggattgggccacctcatgctcctcctcgtatgcctcccaccatgtttcgatgatccatctgcaactataatacatgcatcaatttagagttaat |
33461691 |
T |
|
| Q |
118 |
caatttctgtcttagtcatgttacatctataatttgcagcagtactattaattaacagtgcctttttctatgcttattactacttagtatgaccgtgata |
217 |
Q |
| |
|
||| ||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33461690 |
caacttctgtcatagtcatgttatatctataatttgcagcagtactattaattaacagtgcctttttctatgcttattactacttagtatgaccgtgata |
33461591 |
T |
|
| Q |
218 |
atgtatttattacagtatactgtcatttagaaattcaactgtgatgagtaatcttattggttcat |
282 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33461590 |
atgtatttattacagtatactgtcatttagaaattcaactgtgatgagtaatcttattggttcat |
33461526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University