View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5487_low_1 (Length: 702)
Name: NF5487_low_1
Description: NF5487
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5487_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 11 - 541
Target Start/End: Complemental strand, 27590078 - 27589529
Alignment:
| Q |
11 |
atcatcaatcatatctatctactgtttgacaactcccaagtattttacaaaatcatgtttttaactagcaaagaattcacaattttttcaaataaaattc |
110 |
Q |
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| T |
27590078 |
atcatcaatcatatttatctactctatgacaactcccaaataatttacaaaatcatgtttttaactagcaaagaatttacaattttttcaaataaaattc |
27589979 |
T |
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| Q |
111 |
aaaatttcttacaattattaaccattcatcaccaacnnnnnnngaggggggtaaaccaggacaaattgtgattaataaactatgggttaaagcaagagat |
210 |
Q |
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| T |
27589978 |
aaaatttcttacaactattaatctttcaccaccaacaaaaaaa-aagggagtaaaccaggacaaattgtgattactcaactatgggttaaaggaagagat |
27589880 |
T |
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| Q |
211 |
gaacgaaaacggtacctttcaataactgagttcaaccctctcaatctgctgatacaggcgacga-----gatggagttaaataatgactttttcctcttc |
305 |
Q |
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| T |
27589879 |
gaatgaaaaaaatacctttcattaactgagttcaaccctctcgatctgctgatacagtcgacaaactcggatgcagttaaataatgactttttcctcttc |
27589780 |
T |
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| Q |
306 |
ttcaaggtttcaattttgggagaaaatgaggttggggtatgtttggt--------tgatatcagaaacattgagagtgatattcattagagacaacaact |
397 |
Q |
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| T |
27589779 |
ttcaaagtttcaattttgggagaaaatgaggttggggttggtttggtcgatgttatgatgtgagaaacattaacagtgatattcattaatgacaatatct |
27589680 |
T |
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| Q |
398 |
cacttctgcg-ggttcacacatcaatttaatatgccttttaaatttttcttataaaacat-----gggaattgatagactgtattgtgcttatggtgttg |
491 |
Q |
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| T |
27589679 |
cacttctacgaggcccatactacaatttaacatgccttttaaaattttcttttaaaacatgtaaagggaattgatacactctcatatgtttatggtgttg |
27589580 |
T |
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| Q |
492 |
tgggag-cttcttgaccggatccacacctgctattgtaggtcatttaggtg |
541 |
Q |
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| T |
27589579 |
tgtgagtcttcttgactggatccacatttgctattgtaagtcatttaggtg |
27589529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 82; Significance: 2e-38; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 596 - 685
Target Start/End: Complemental strand, 37124162 - 37124073
Alignment:
| Q |
596 |
atgtcattacagtcttttgaatgtattaatgtattaaaactacaaacacatctcttaagtgttttttgttaattattttacggactaaat |
685 |
Q |
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| T |
37124162 |
atgtcattatagtcttttgaatgtattaatgtattaaaactacaaacacatctcttaggtgttttttgttaattattttacggactaaat |
37124073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 623 - 685
Target Start/End: Complemental strand, 37130786 - 37130722
Alignment:
| Q |
623 |
aatgtattaaaactacaaacacatctcttaa-gtg-ttttttgttaattattttacggactaaat |
685 |
Q |
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| T |
37130786 |
aatgtattaaaattacaaacacatctcctaatgtgtttttttgttaattattttatagactaaat |
37130722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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