View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5488-Insertion-1 (Length: 783)
Name: NF5488-Insertion-1
Description: NF5488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5488-Insertion-1 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 716; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 716; E-Value: 0
Query Start/End: Original strand, 8 - 783
Target Start/End: Complemental strand, 33555082 - 33554302
Alignment:
| Q |
8 |
attttcttctcttctataagtacacgctttcatttccctctatttcattctaacaaaaacgtgtttcaatatttcaacaaccgtttcaacattctcaacg |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33555082 |
attttcttctcttctataagtacacgctttcatttccctctatttcattcaaacaaaaacgtgtttcaatatttcaacaaccgtttcaacattctcaacg |
33554983 |
T |
|
| Q |
108 |
cctccgcgttcattcttttgtatggcagtatcctttctggcacatgagttatctgaactctgtctcggtaagccgccgttgaagtctatttcaacgtcgg |
207 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33554982 |
cctccgcgttcattcttttgcatggcagtatcctttctggcacatgagttatctgaactctgtctcggtaagccgccgttgaagtctatttcaacgtcgg |
33554883 |
T |
|
| Q |
208 |
ctaccattgccgaggcaattgaagtcctcagaagctccgacgatagtttcgtcagtgtttggagctgtgaccattctgaattcactcgttgtcaatgtgt |
307 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33554882 |
ctaccattgccgaggcaattgaagtccttagaagctccgacgatagtttcgtcagtgtttggagctgtgaccattctgaattcactcgttgtcaatgtgt |
33554783 |
T |
|
| Q |
308 |
tgggaaagtttgcatggttgatgttatttgttacctttgcaaaccagaaaatcttttgtgtccttctaaagctcttaaagctttggtttctgtagttttg |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
33554782 |
tgggaaagtttgcatggttgatgttatttgttacctttgcaaaccagaaaatcttttgtgtccttctaaagctcttaatgctttggtttctgtagttttg |
33554683 |
T |
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| Q |
408 |
cctaaggttggtggtcttgttgttcagcttgaatcttcttctaggtacnnnnnnnatttatctttgaatcttgaaattatgttttaatgtgc-----ttt |
502 |
Q |
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| T |
33554682 |
cctaaggttggtggtcttgttgttcagcttgaatcttcttctaggtactttttttatatatctttgaatcttgaaattatgttttaatgtgctttagttt |
33554583 |
T |
|
| Q |
503 |
agtatgatcaagattaagaattttaattaattaaccctcattcttgttattttgatgatacagcttattggaagccattgatctcatactccagggagca |
602 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33554582 |
agtatgatcaagattaagaattttaattaattaacccttattcttgttattttgatgatacagcttattggaagccattgatctcatactccagggagca |
33554483 |
T |
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| Q |
603 |
cagaatcttgtggtgccaattttgcaaacaaaaagaggtggaatttcaaggagaaaacagcaacaaaagtcatcaacaatcaacaaccacaacggtgttg |
702 |
Q |
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| T |
33554482 |
cagaatcttgtggtgccaattttgcaaacaaaaagaggtggaatttcaaggagaaaacagcaacaaaagtcatcaacaatcaacaaccacaacggtgttg |
33554383 |
T |
|
| Q |
703 |
aattctgttggttaacacaagaggatgtgatcaggttcttgcttggttccattggcctcttcactccactccctgcatact |
783 |
Q |
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| T |
33554382 |
aattctgttggttaacacaagaggatgtgatcaggttcttgcttggttccattggcctcttcactccactccctgcatact |
33554302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 154; E-Value: 3e-81
Query Start/End: Original strand, 507 - 779
Target Start/End: Complemental strand, 33541354 - 33541085
Alignment:
| Q |
507 |
tgatcaagattaagaattttaattaattaaccctcattcttgttattttgatgatacagcttattggaagccattgatctcatactccagggagcacaga |
606 |
Q |
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| T |
33541354 |
tgatcaagattaagaattttagttaattaacg-tc--tcttgttaatttgatgttacagcttattggatgccattgatctcatacttgagggggcacaaa |
33541258 |
T |
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| Q |
607 |
atcttgtggtgccaattttgcaaacaaaaagaggtggaatttcaaggagaaaacagcaacaaaagtcatcaacaatcaacaaccacaacggtgttgaatt |
706 |
Q |
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| T |
33541257 |
atcttgtggtgccaatttcgcagacaaaaaaaggtggcctttcaaggagaaaactgcagcagaagtcattaacaatcaacagccacaatggtgttgagtt |
33541158 |
T |
|
| Q |
707 |
ctgttggttaacacaagaggatgtgatcaggttcttgcttggttccattggcctcttcactccactccctgca |
779 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | ||||||||||| |
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| T |
33541157 |
ctgctggttaacacaagaggatgtgatcaggttcttgcttggttccattggccgcttcagtgcactccctgca |
33541085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 146; E-Value: 2e-76
Query Start/End: Original strand, 91 - 455
Target Start/End: Complemental strand, 33542613 - 33542247
Alignment:
| Q |
91 |
tttcaacattctcaacgcctccgcgttcattcttttgtatggcagtatcctttctggcacatgagttatctgaactctgtctcggtaagccgccgttgaa |
190 |
Q |
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| T |
33542613 |
tttcaacattctctccgccgccgcgttcaatcttt-gcatggaagttttctttctgtcacatgagttatctgatctctgtctcggtaagccgccgttgaa |
33542515 |
T |
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| Q |
191 |
gtctatttcaacgtcggctaccattgccgaggcaattgaagtcctcagaagctccgacg---atagtttcgtcagtgtttggagctgtgaccattctgaa |
287 |
Q |
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||| |||| |||||||||||| | || |||||||||||||||||| | ||||||| || | ||||||||||||||||||| ||||||||| |||||| |
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| T |
33542514 |
gtcgctttcgacgtcggctaccgtcgctgaggcaattgaagtcctccgtagctccggcggcgaaagtttcgtcagtgtttggaactgtgaccactctgaa |
33542415 |
T |
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| Q |
288 |
ttcactcgttgtcaatgtgttgggaaagtttgcatggttgatgttatttgttacctttgcaaaccagaaaatcttttgtgtccttctaaagctcttaaag |
387 |
Q |
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| T |
33542414 |
ttcggtcaatgtcaatgtgttgggaaaatttgtatggttgatgttattgttttcctttgcaaacaggaaaatcttttgtgtccttctaaagctcttaagg |
33542315 |
T |
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| Q |
388 |
ctttggtttctgtagttttgcctaaggttggtggtcttgttgttcagcttgaatcttcttctaggtac |
455 |
Q |
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||| |||| ||||| | |||||| ||||||||||||||| || ||| |||| ||||||||| |
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| T |
33542314 |
cttccatttccaatgttttcaatgaggttgatggtcttgttgttcatctagaaccttcatctaggtac |
33542247 |
T |
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