View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5488-Insertion-2 (Length: 638)
Name: NF5488-Insertion-2
Description: NF5488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5488-Insertion-2 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 554; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 554; E-Value: 0
Query Start/End: Original strand, 8 - 638
Target Start/End: Complemental strand, 12103520 - 12102895
Alignment:
| Q |
8 |
cttacaattccttcaaattcggaaggttcccgagagtcgctgggagcacacctgtcaactgattgttctcaagatgactgcgaaaggtagggatgcattc |
107 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
12103520 |
cttacaattccttcaaattcggaaggttcccgagagtcgctgggagcacacctgtcaactgattgttctcaagatgactgcgaaaggtaggcatgcattc |
12103421 |
T |
|
| Q |
108 |
ataatactaatactaggctcatacaaaaacggtagggatgcatacataaatcctggttgatacatacgatattttcctcgagcaatctcttcgatattta |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
12103420 |
ataatactaatactaggctcatacaaaaacggtagggatgcatacataaatcctggttgatacatacgatattttcctcgagcaatctctttgatattta |
12103321 |
T |
|
| Q |
208 |
caatggctttactaatactaggctggcccggaagtactagcctgaattttcgagattcattttgcagaaaatcttctatctctgcaagatagctgaatgc |
307 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12103320 |
caatggctttactaacactaggctggcccggaagtactagcctgaattttcgagattcattttgcagaaaatcttctatctctgcaagatagctgaatgc |
12103221 |
T |
|
| Q |
308 |
acatccaacagcaggaaaaccatctaagttcaaccagtatgttagaaatccattcggacctactacagctgtctgtctgcattactttcactgctggcat |
407 |
Q |
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||||||||||||||||||||||||||||||||||| |||| ||||||||||| ||| |||||||||||||| |||||||||||||||||| |||||| |
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| T |
12103220 |
acatccaacagcaggaaaaccatctaagttcaaccggtattttagaaatccactcgtacctactacagctg----tctgcattactttcactggtggcat |
12103125 |
T |
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| Q |
408 |
tttgtctccgttaacatcaatggatacattggtcgcaattttctcggttccatcagcaaaatcgacgaagtaaattgctttcttaacagaatctgactcc |
507 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| |||||| |
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| T |
12103124 |
ttcgtctccgttaacatcaatggatacattggtcgcaattttctcagttccatcagcaaaatcgacgaggtaaattgctttcttaacagaatccgactcc |
12103025 |
T |
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| Q |
508 |
caaattctatcaaacgggtcatgtggatacctgatatggtagaaacatacacacttccaaagtaatgcagtttatggaaactatttatagctcatacaaa |
607 |
Q |
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| T |
12103024 |
caaattctatcaaacaggtcatgtggatacctgatatggtagaaacatacacacttccaaagtaatgcagtttatggaaactatttatagctcatacaaa |
12102925 |
T |
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| Q |
608 |
aacatatatgaaaacagttttgacatattat |
638 |
Q |
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| T |
12102924 |
aacatatatgaaaacag-tttgacatattat |
12102895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 168; Significance: 1e-89; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 168; E-Value: 1e-89
Query Start/End: Original strand, 155 - 556
Target Start/End: Original strand, 28788168 - 28788571
Alignment:
| Q |
155 |
aaatcctggttgatacatacgatattttcctcgagcaatctcttcgatatttacaatggctttactaatactaggctggcccggaagtactagcctgaat |
254 |
Q |
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||||||||||| ||| | ||||||||| | | ||||| |||||||||||||||| | ||||||||||||| || ||| || |||||||||||||||||| |
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| T |
28788168 |
aaatcctggttcataaagacgatatttgcgtagagcattctcttcgatatttaccacggctttactaatatcagcctgtcctggaagtactagcctgaat |
28788267 |
T |
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| Q |
255 |
tttcgagattcattttgcagaaaatcttctatctctgcaagatagctgaatgcacatccaacagcaggaaaaccatctaagttcaaccagtatgttagaa |
354 |
Q |
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||||||||||||||| || |||| |||||||||||||||||||||||| |||| ||||| || ||||||||||| |||||||||| ||| |||||| |
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| T |
28788268 |
tttcgagattcatttcgcggaaattcttctatctctgcaagatagctgtatgcccatccggtggctggaaaaccatccaagttcaaccggtaagttagag |
28788367 |
T |
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| Q |
355 |
atccattcggacctactacagctgtctgtctgcattactttcactgctggcattttgtctccgt------taacatcaatggatacattggtcgcaattt |
448 |
Q |
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| T |
28788368 |
atccatttgtacctactacag----ctgtctgcattactttcactggtggcatttcatctccattacctctaacatcaatggacacattagtcgaaattt |
28788463 |
T |
|
| Q |
449 |
tctcggttccatcagcaaaatcgacgaagtaaattgctttcttaacagaatctgactcccaaattctatcaaacgggtcatgtggatacctgatatggta |
548 |
Q |
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||| |||||||||||||| ||| || | |||| |||||||||| ||||||||||||||||||||||| ||||| ||||||| ||||||||||||| | | |
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| T |
28788464 |
tcttggttccatcagcaacatcaacaaggtaatttgctttcttgacagaatctgactcccaaattctgtcaaatgggtcatcgggatacctgatattgca |
28788563 |
T |
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| Q |
549 |
gaaacata |
556 |
Q |
| |
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|||||||| |
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| T |
28788564 |
gaaacata |
28788571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 8 - 87
Target Start/End: Original strand, 28787077 - 28787156
Alignment:
| Q |
8 |
cttacaattccttcaaattcggaaggttcccgagagtcgctgggagcacacctgtcaactgattgttctcaagatgactg |
87 |
Q |
| |
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|||||| |||| ||||||| ||||||||||| | ||| |||||||| ||||| ||||||||||||||||||||||||||| |
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| T |
28787077 |
cttacagttccctcaaatttggaaggttccccaaagtggctgggagtacacccgtcaactgattgttctcaagatgactg |
28787156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 61; Significance: 7e-26; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 319 - 556
Target Start/End: Complemental strand, 40531463 - 40531230
Alignment:
| Q |
319 |
caggaaaaccatctaagttcaaccagtatgttagaaatccattcggacctactacagctgtctgtctgcattactttcactgctggcattttgtctccgt |
418 |
Q |
| |
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||||||| ||||| || ||||||| |||||||||| ||||||| | ||| ||||| |||||||| ||| |||||||||| ||| | | ||||| | |
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| T |
40531463 |
caggaaacccatccaaattcaaccggtatgttagagatccatttgtaccgactacggctgtctg----catcactttcactggtggtacatcgtctctat |
40531368 |
T |
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| Q |
419 |
taacatcaatggatacattggtcgcaattttctcggttccatcagcaaaatcgacgaagtaaattgctttcttaacagaatctgactcccaaattctatc |
518 |
Q |
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|||| ||| | ||||||||| | || |||||| |||||| |||||| ||| || | ||| |||||||||| |||||||| ||||||||||||||||| |
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| T |
40531367 |
taactaaaattggtacattggtagaaactttctcagttccaacagcaacatcaacaagataatttgctttcttcacagaatcagactcccaaattctatc |
40531268 |
T |
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| Q |
519 |
aaacgggtcatgtggatacctgatatggtagaaacata |
556 |
Q |
| |
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||| ||||||| |||||||||| |||| ||||||||| |
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| T |
40531267 |
aaaagggtcatcaggatacctgaaatggaagaaacata |
40531230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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