View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5488-Insertion-3 (Length: 561)
Name: NF5488-Insertion-3
Description: NF5488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5488-Insertion-3 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 204; Significance: 1e-111; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 7 - 299
Target Start/End: Complemental strand, 30499371 - 30499085
Alignment:
| Q |
7 |
aagttcatcacaacaaactgaacgatctaaacttaaatcctttctaatgttatgagaattcaaagtttaagggtgaggtaattctaaagtaacatgtgtc |
106 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| |||||| |||||||| |||||||||||||||||| |
|
|
| T |
30499371 |
aagttcatcacaacaaac-gaacgatctaaacttgaatcctttctaatgttatgagaattcaaagcttaaggatgaggtaactctaaagtaacatgtgtc |
30499273 |
T |
|
| Q |
107 |
ctctttaaagatataaatacgcatcttaccaacatagccccctatttagtagtatgtagtcaagagccctaagtctcattacctatgtcacccaatgata |
206 |
Q |
| |
|
||||||||||||| |||||||| |||||||| ||||||| |||| | | ||||||||||| |||| |||||||| |||||||||||||||||||||| |
|
|
| T |
30499272 |
ctctttaaagatacaaatacgcgtcttaccagcatagcctcctact----actatgtagtcaatagcc-taagtctcgttacctatgtcacccaatgata |
30499178 |
T |
|
| Q |
207 |
tttatattattctcatgttctaaaacacttgtctataatcttttaagttcaacaacatccttcgtcatataacaaaggttgttgcctagattt |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
30499177 |
tttatattattctcatgttctaaaacacttgtctataatcttttaagtccaacaacatcctacgtcatataacaaaggttgttgcctagattt |
30499085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 368 - 458
Target Start/End: Complemental strand, 30499021 - 30498931
Alignment:
| Q |
368 |
gattatggaaagtttatccttcgattgttttccataatttcaagacagaagaaatatttattaactcatcatagttatgtgcttatctaat |
458 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30499021 |
gattatggaaagtttatccttcgattgttttccataatttcatgacagaagaaatatttattaactcatcatagttatgtgcttatctaat |
30498931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 523 - 558
Target Start/End: Complemental strand, 30498866 - 30498831
Alignment:
| Q |
523 |
tagagtttttgctaaagtttacaaccctgcatggat |
558 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||| |
|
|
| T |
30498866 |
tagagtttttgctaaagtttacaaccctacatggat |
30498831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 42 - 116
Target Start/End: Complemental strand, 35299036 - 35298962
Alignment:
| Q |
42 |
aatcctttctaatgttatgagaattcaaagtttaagggtgaggtaattctaaagtaacatgtgtcctctttaaag |
116 |
Q |
| |
|
||||| |||||||| |||| | |||||||| ||| |||||||||||| ||||||||| |||||||||||||| |
|
|
| T |
35299036 |
aatcccttctaatgatatgtaatttcaaagtctaaaggtgaggtaattttaaagtaactaatgtcctctttaaag |
35298962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University