View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5488-Insertion-4 (Length: 498)
Name: NF5488-Insertion-4
Description: NF5488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5488-Insertion-4 |
 | |
|
| [»] chr6 (1 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 39 - 498
Target Start/End: Complemental strand, 17167718 - 17167282
Alignment:
| Q |
39 |
ccgctccatcccagcactcccagtgaacaaataaattaggcggtgtcaaagaaatgcaatcccagccatctcatcaaattgccccacaccttcctagcaa |
138 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17167718 |
ccgctccatcccagcactcccagtgaacaaataaattaggcggtgtcaaagaaatgcaatcccagccatctcatcaaattgccccacaccttcctagcaa |
17167619 |
T |
|
| Q |
139 |
aatcacaatgcaggaacaaatggttggccaattccaactccccttcacacatcacacaatctaaagagacatccggtgataacacttgccttagggaaag |
238 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
17167618 |
aatcacaatgcaggaacaaatggttggccaattccaactccccttcacacatcacacaatctaaagagacatccggtgatagcacttgccttagggaaag |
17167519 |
T |
|
| Q |
239 |
attagcttttgtcgggagcctattatgaaggagggagcctattatgaaggagcttccagcaaaagccgcaattttagaaggatcgtcgctcttccaaatc |
338 |
Q |
| |
|
|||| |||||||||||||||| ||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17167518 |
attaccttttgtcgggagccttttatgaa-------------------ggagtttccagcaaaagccgcaattttagaaggatcgtcgctcttccaaatc |
17167438 |
T |
|
| Q |
339 |
cgcgagagcaccctacctgcctcatccgagatggaatcgtccgcaagcatcaccctttccaactttgtatacataattttcaccgtaaatatcccgttgt |
438 |
Q |
| |
|
||||||||||||||||||||||||||| | ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
17167437 |
cgcgagagcaccctacctgcctcatcctaaatggaatcgtccgcaagcatcaccccttccaactttgtatacataattttcaccgtaaatctcccg---- |
17167342 |
T |
|
| Q |
439 |
cttcgagcctccaccaccaaacatcctccacttggctccccctaatatcctccaaatcct |
498 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
17167341 |
cttcgagcctccaccaccaaacatcctccacttggctctccctaatatcctccaaatcct |
17167282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 121 - 203
Target Start/End: Original strand, 20040593 - 20040675
Alignment:
| Q |
121 |
cccacaccttcctagcaaaatcacaatgcaggaacaaatggttggccaattccaactccccttcacacatcacacaatctaaa |
203 |
Q |
| |
|
||||||||||| | ||||| |||||||| |||||||||||||| ||| ||||| ||||||||||||||||||||||||||| |
|
|
| T |
20040593 |
cccacaccttcatggcaaactcacaatggaggaacaaatggttagccgattccttttccccttcacacatcacacaatctaaa |
20040675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 104 - 200
Target Start/End: Complemental strand, 10509106 - 10509010
Alignment:
| Q |
104 |
ccatctcatcaaattgccccacaccttcctagcaaaatcacaatgcaggaacaaatggttggccaattccaactccccttcacacatcacacaatct |
200 |
Q |
| |
|
||||||||| | ||| ||||||||||| | ||||| |||||||| || ||||| || || ||| ||| |||||||||| |||||||||||||||| |
|
|
| T |
10509106 |
ccatctcataacattctcccacaccttcatcgcaaattcacaatggagaaacaagtgattagccgatttcaactcccctaaacacatcacacaatct |
10509010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University