View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5488-Insertion-8 (Length: 133)

Name: NF5488-Insertion-8
Description: NF5488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5488-Insertion-8
NF5488-Insertion-8
[»] chr1 (2 HSPs)
chr1 (8-133)||(8059991-8060116)
chr1 (16-93)||(51602641-51602718)
[»] chr7 (2 HSPs)
chr7 (8-129)||(29350290-29350411)
chr7 (16-80)||(48897782-48897846)
[»] chr8 (1 HSPs)
chr8 (32-132)||(1362758-1362858)
[»] chr3 (6 HSPs)
chr3 (9-130)||(29171268-29171389)
chr3 (16-112)||(25662458-25662554)
chr3 (16-112)||(25668863-25668959)
chr3 (16-112)||(25675268-25675364)
chr3 (16-112)||(25681942-25682038)
chr3 (16-112)||(25690246-25690342)
[»] chr5 (1 HSPs)
chr5 (16-112)||(38063382-38063478)
[»] chr6 (1 HSPs)
chr6 (17-112)||(18623636-18623731)
[»] chr2 (2 HSPs)
chr2 (16-93)||(34354793-34354870)
chr2 (8-132)||(13247585-13247705)


Alignment Details
Target: chr1 (Bit Score: 106; Significance: 2e-53; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 106; E-Value: 2e-53
Query Start/End: Original strand, 8 - 133
Target Start/End: Original strand, 8059991 - 8060116
Alignment:
Q  8 cctttgaccatgtcaaccaaagtttttgaatcactttctacttgagggtgatgaaatccttgtctccaagcaaactgtattcccaataacattctccaca 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||| |||||||||||    
T  8059991 cctttgaccatgtcaaccaaagtttttgaatcactttctacttgaaggtgatgaaattcttgtctccaagcaaactgtatttccaatagcattctccaca 8060090  T
Q  108 tttcaatagtgagagcatcacaagtg 133  Q
    |||||| |||||||||||||||||||    
T  8060091 tttcaacagtgagagcatcacaagtg 8060116  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 16 - 93
Target Start/End: Original strand, 51602641 - 51602718
Alignment:
Q  16 catgtcaaccaaagtttttgaatcactttctacttgagggtgatgaaatccttgtctccaagcaaactgtattcccaa 93  Q
    |||||||||||| |||||||| ||| |||| |||||| | |  || || |||||||||||||||| ||| ||||||||    
T  51602641 catgtcaaccaatgtttttgagtcattttccacttgaagattgtggaaaccttgtctccaagcaagctggattcccaa 51602718  T

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Target: chr7 (Bit Score: 70; Significance: 6e-32; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 6e-32
Query Start/End: Original strand, 8 - 129
Target Start/End: Complemental strand, 29350411 - 29350290
Alignment:
Q  8 cctttgaccatgtcaaccaaagtttttgaatcactttctacttgagggtgatgaaatccttgtctccaagcaaactgtattcccaataacattctccaca 107  Q
    ||||||| ||||||||||||||||||||| |||||||| | |||| ||||||||||||||||||| |||||||  || |||||||| ||||||| |||||    
T  29350411 cctttgatcatgtcaaccaaagtttttgagtcactttccaattgaaggtgatgaaatccttgtcttcaagcaagatgcattcccaagaacattccccaca 29350312  T
Q  108 tttcaatagtgagagcatcaca 129  Q
    |||||| | |||||||||||||    
T  29350311 tttcaacaatgagagcatcaca 29350290  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 16 - 80
Target Start/End: Original strand, 48897782 - 48897846
Alignment:
Q  16 catgtcaaccaaagtttttgaatcactttctacttgagggtgatgaaatccttgtctccaagcaa 80  Q
    ||||||||||||||||||||| |||||||| |||||| | |  || || ||||||||||||||||    
T  48897782 catgtcaaccaaagtttttgagtcactttccacttgaagattgtggaaaccttgtctccaagcaa 48897846  T

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Target: chr8 (Bit Score: 65; Significance: 5e-29; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 65; E-Value: 5e-29
Query Start/End: Original strand, 32 - 132
Target Start/End: Complemental strand, 1362858 - 1362758
Alignment:
Q  32 tttgaatcactttctacttgagggtgatgaaatccttgtctccaagcaaactgtattcccaataacattctccacatttcaatagtgagagcatcacaag 131  Q
    ||||||||||||||||||||| || |||||||||||||||||||||||| ||| |||||||| ||||||| |||||||| |  |||||||||||||||||    
T  1362858 tttgaatcactttctacttgaaggcgatgaaatccttgtctccaagcaagctgcattcccaagaacattccccacattttagaagtgagagcatcacaag 1362759  T
Q  132 t 132  Q
    |    
T  1362758 t 1362758  T

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Target: chr3 (Bit Score: 58; Significance: 8e-25; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 8e-25
Query Start/End: Original strand, 9 - 130
Target Start/End: Original strand, 29171268 - 29171389
Alignment:
Q  9 ctttgaccatgtcaaccaaagtttttgaatcactttctacttgagggtgatgaaatccttgtctccaagcaaactgtattcccaataacattctccacat 108  Q
    |||||| ||| ||||||||||||||||| |||||||  | |||| |||||||||||| || ||||||||||||||  |||||||| ||||||| ||| ||    
T  29171268 ctttgatcatttcaaccaaagtttttgagtcacttttcatttgaaggtgatgaaatcattatctccaagcaaactacattcccaagaacattccccatat 29171367  T
Q  109 ttcaatagtgagagcatcacaa 130  Q
    |||| | |||||||||||||||    
T  29171368 ttcagtggtgagagcatcacaa 29171389  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 16 - 112
Target Start/End: Complemental strand, 25662554 - 25662458
Alignment:
Q  16 catgtcaaccaaagtttttgaatcactttctacttgagggtgatgaaatccttgtctccaagcaaactgtattcccaataacattctccacatttca 112  Q
    ||||||||||| ||||||||| |||||||| |||||| | || || || || |||||| |||||||||| ||||||||  |||||  ||||||||||    
T  25662554 catgtcaaccatagtttttgagtcactttccacttgaagatggtggaaaccatgtctctaagcaaactgcattcccaagtacatttcccacatttca 25662458  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 16 - 112
Target Start/End: Complemental strand, 25668959 - 25668863
Alignment:
Q  16 catgtcaaccaaagtttttgaatcactttctacttgagggtgatgaaatccttgtctccaagcaaactgtattcccaataacattctccacatttca 112  Q
    ||||||||||| ||||||||| |||||||| |||||| | || || || || |||||| |||||||||| ||||||||  |||||  ||||||||||    
T  25668959 catgtcaaccatagtttttgagtcactttccacttgaagatggtggaaaccatgtctctaagcaaactgcattcccaagtacatttcccacatttca 25668863  T

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Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 16 - 112
Target Start/End: Complemental strand, 25675364 - 25675268
Alignment:
Q  16 catgtcaaccaaagtttttgaatcactttctacttgagggtgatgaaatccttgtctccaagcaaactgtattcccaataacattctccacatttca 112  Q
    ||||||||||| ||||||||| |||||||| |||||| | || || || || |||||| |||||||||| ||||||||  |||||  ||||||||||    
T  25675364 catgtcaaccatagtttttgagtcactttccacttgaagatggtggaaaccatgtctctaagcaaactgcattcccaagtacatttcccacatttca 25675268  T

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Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 16 - 112
Target Start/End: Complemental strand, 25682038 - 25681942
Alignment:
Q  16 catgtcaaccaaagtttttgaatcactttctacttgagggtgatgaaatccttgtctccaagcaaactgtattcccaataacattctccacatttca 112  Q
    ||||||||||| ||||||||| |||||||| |||||| | || || || || |||||| |||||||||| ||||||||  |||||  ||||||||||    
T  25682038 catgtcaaccatagtttttgagtcactttccacttgaagatggtggaaaccatgtctctaagcaaactgcattcccaagtacatttcccacatttca 25681942  T

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Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 16 - 112
Target Start/End: Complemental strand, 25690342 - 25690246
Alignment:
Q  16 catgtcaaccaaagtttttgaatcactttctacttgagggtgatgaaatccttgtctccaagcaaactgtattcccaataacattctccacatttca 112  Q
    ||||||||||| ||||||||| |||||||| |||||| | || || || || |||||| |||||||||| ||||||||  |||||  ||||||||||    
T  25690342 catgtcaaccatagtttttgagtcactttccacttgaagatggtggaaaccatgtctctaagcaaactgcattcccaagtacatttcccacatttca 25690246  T

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Target: chr5 (Bit Score: 45; Significance: 5e-17; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 5e-17
Query Start/End: Original strand, 16 - 112
Target Start/End: Complemental strand, 38063478 - 38063382
Alignment:
Q  16 catgtcaaccaaagtttttgaatcactttctacttgagggtgatgaaatccttgtctccaagcaaactgtattcccaataacattctccacatttca 112  Q
    ||||||||||||||||||| | |||||||| |||||| | |  || || |||||||||||||||| ||| ||||||||  |||||||||||||||||    
T  38063478 catgtcaaccaaagttttttagtcactttccacttgaagattgtggaaaccttgtctccaagcaagctgcattcccaagtacattctccacatttca 38063382  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 17 - 112
Target Start/End: Original strand, 18623636 - 18623731
Alignment:
Q  17 atgtcaaccaaagtttttgaatcactttctacttgagggtgatgaaatccttgtctccaagcaaactgtattcccaataacattctccacatttca 112  Q
    |||||||| ||||||||||| ||||||| ||||||| | |  || || ||||||||||||||||  |||||||||||  ||||||  |||||||||    
T  18623636 atgtcaactaaagtttttgagtcactttttacttgatgattgtggaaaccttgtctccaagcaagttgtattcccaagtacattcctcacatttca 18623731  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 16 - 93
Target Start/End: Original strand, 34354793 - 34354870
Alignment:
Q  16 catgtcaaccaaagtttttgaatcactttctacttgagggtgatgaaatccttgtctccaagcaaactgtattcccaa 93  Q
    ||||||||||||||||||||| |||||||| |||||| | |  || ||  ||||||||||||||| ||| ||||||||    
T  34354793 catgtcaaccaaagtttttgagtcactttccacttgaagattgtggaaaacttgtctccaagcaagctgcattcccaa 34354870  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 8 - 132
Target Start/End: Original strand, 13247585 - 13247705
Alignment:
Q  8 cctttgaccatgtcaaccaaagtttttgaatcactttctacttgagggtgatgaaatccttgtctccaagcaaactgtattcccaataacattctccaca 107  Q
    ||||||| ||||||||||||||||| ||  ||| |||  |||||| || | ||||| |||||||||    ||||||| |||| |||  |||||| ||| |    
T  13247585 cctttgatcatgtcaaccaaagtttatgtgtcaatttacacttgatggcggtgaaaaccttgtctc----caaactgcattctcaagtacattccccata 13247680  T
Q  108 tttcaatagtgagagcatcacaagt 132  Q
    ||||| | |||||||||||||||||    
T  13247681 tttcagtggtgagagcatcacaagt 13247705  T

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