View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5488_high_1 (Length: 938)
Name: NF5488_high_1
Description: NF5488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5488_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 818; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 818; E-Value: 0
Query Start/End: Original strand, 11 - 919
Target Start/End: Complemental strand, 46960024 - 46959118
Alignment:
| Q |
11 |
caaaggcatgggagaagattgaaaatgtaaatgtatat--ggagcttatcttacgaacacgaaaaatgggctgagaatcaaaacatggcaggtaagttgg |
108 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46960024 |
caaaggcatgggagaagattgaaaatgtaaatgtatatatggagcttatcttacgaacacgaaaaatgggctgagaatcaaaacatggcaggtaagttgg |
46959925 |
T |
|
| Q |
109 |
taaccttagcattttcattctcattaaatgtcacccagtaatgttcaatttgattgagtcaagttaaattttctttagggtgggcatggtcttgcctcca |
208 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46959924 |
taaccttagcattttcattctcattaaatgtcacccagtaatgttcaatttgattgagtcaagttaaattttctttagggtgggcatggtcttgcctcca |
46959825 |
T |
|
| Q |
209 |
atatcacatttcaggatatcgtggtggaaaatgtgtccaatccaataataattgatcaatactactgtgatccccgaattccatgcaagaatcaggtatt |
308 |
Q |
| |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| |
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| T |
46959824 |
atatcacatttcaggatatcgtgatggaaaatgtgtccaatccaataataattgatcaatactactgtgattcccgacttccatgcaagaatcaggtatt |
46959725 |
T |
|
| Q |
309 |
gaattttaagatatttttgcagggtcgttttgtaagtctacatgtgcatgcagtgacacattattaatagttgtatttatttatctgaggagatagccaa |
408 |
Q |
| |
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|||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46959724 |
gaattttaagatatttttgcagggtcattttgcaagtctacatgtgcatgcagtgacacattattaatagttgtatttatttatctgaggagatagccaa |
46959625 |
T |
|
| Q |
409 |
tatagttttgaattgtctttatgatttgtagaatataatagctgatttcataattttcatcgattataatcatgtatgtcagtgacatacattcttgtca |
508 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| |
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| T |
46959624 |
tatagttttgaattgtctttatgatttgtagaatataatagctgatttcataattttcatcaattataatc----atgtcagtgacatacattcttgtca |
46959529 |
T |
|
| Q |
509 |
atctcctacaaggattcaaattaatgaactttcataatgattttaattcaactgaagannnnnnnctgtaagaatgtaataatgtcctgaattgtgatgc |
608 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| |
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|
| T |
46959528 |
atctcctacaaggattcaaattaatgaactttcataatgattttaattcaactgatgatttttttctgtaagaatgtaataatgtcctgaattgtgatgc |
46959429 |
T |
|
| Q |
609 |
agacttcagctgttcaagtggcgaacatatccttcattaatattataggaacttcggcctccaaagaaaccattaaatttgcctgcagtgatacctatcc |
708 |
Q |
| |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
46959428 |
agacttcagctgttcaagtggtgaacatatccttcattaatattataggaacttcggcctccgaagaaaccattaaatttgcctgcagtgatacctatcc |
46959329 |
T |
|
| Q |
709 |
atgtgaaggactatatctcgaaaatatttatcttccatcatactttggagaaaatagaagatcttactgttggcaagctcatggttctacttcttctcaa |
808 |
Q |
| |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46959328 |
atgtgaaggactacatctcgaaaatatttatcttccatcatactttggagaaaatagaagatcttactgttggcaagctcatggttctacttcttctcaa |
46959229 |
T |
|
| Q |
809 |
ggctgggtgaatcctcccgcttgtttttcaacaagtagtgatttgattcgacagaatgtcttgttagagacaaatcctgatattaattatgatttgtaat |
908 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46959228 |
ggctgtgtgaatcctcccgcttgtttttcaacaagtagtgatttgattcgacagaatgtcttgttagagacaaatcctgatattaattatgatttgtaat |
46959129 |
T |
|
| Q |
909 |
gacaatgggat |
919 |
Q |
| |
|
||||||||||| |
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|
| T |
46959128 |
gacaatgggat |
46959118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 176; Significance: 3e-94; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 176; E-Value: 3e-94
Query Start/End: Original strand, 484 - 896
Target Start/End: Original strand, 44522569 - 44522972
Alignment:
| Q |
484 |
atgtcagtgacatacattcttgtc-aatctcctacaaggattcaaattaatgaactttcataatgattttaattcaactgaagannnnnnnctgtaagaa |
582 |
Q |
| |
|
||||||||||||||||||| |||| ||||||| ||||||||||||||||||||| |||||| || |||| |||||||||||||| |||||| || |
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| T |
44522569 |
atgtcagtgacatacattcctgtcgaatctccaacaaggattcaaattaatgaagtttcatgataattt-aattcaactgaagatattatgctgtaaaaa |
44522667 |
T |
|
| Q |
583 |
tgtaataatgtcctgaattgtgatgcagacttcagctgttcaagtggcgaacatatccttcattaatattataggaacttcggcctccaaagaaaccatt |
682 |
Q |
| |
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| |||| || || ||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||| || ||||||||||| |
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| T |
44522668 |
tttaat---gtaatgcattgtgatgcagacttcagctgttcaagtggggaacatatccttcattaatattcaaggaacttcggccaccgaagaaaccatt |
44522764 |
T |
|
| Q |
683 |
aaatttgcctgcagtgatacctatccatgtgaaggactatatctcgaaaatatttatcttccatcatactttggagaaaatagaagatcttactgttggc |
782 |
Q |
| |
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|||||||||||||||||| | | |||||| |||||||||||||| |||||||||| ||||| |||||||||||||| ||||| ||||||||| ||||||| |
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| T |
44522765 |
aaatttgcctgcagtgatgcttctccatgcgaaggactatatctggaaaatatttttcttcgatcatactttggaggaaatacaagatcttattgttggc |
44522864 |
T |
|
| Q |
783 |
aagctcatggttctacttcttctcaaggctgggtgaatcctcccgcttgtttttcaacaagtagtgatttgattcgacagaatgtcttgttagagacaaa |
882 |
Q |
| |
|
|||||||||| |||| |||| || | ||| | ||||| | || ||||| |||||||||||||| ||| |||||||||||||||||||| |||| |
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| T |
44522865 |
aagctcatgg------ttctgctcagggttatgtgtaccctcctgtctgcttttcgacaagtagtgatttaattagacagaatgtcttgttagagccaaa |
44522958 |
T |
|
| Q |
883 |
tcctgatattaatt |
896 |
Q |
| |
|
||||| |||||||| |
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|
| T |
44522959 |
tcctgctattaatt |
44522972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 127; E-Value: 4e-65
Query Start/End: Original strand, 18 - 333
Target Start/End: Original strand, 44522137 - 44522455
Alignment:
| Q |
18 |
atgggagaagattgaaaatgtaaatgtatatggagcttatcttacgaacacgaaaaatgggctgagaatcaaaacatggcaggtaagttg----gtaacc |
113 |
Q |
| |
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||||||||||||| ||||||||| ||| |||||||||||||| ||||| | |||||| |||||||||||||||||||||||| || |||||| |
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| T |
44522137 |
atgggagaagattcaaaatgtaattgttgatggagcttatctttacaacactgataatggggtgagaatcaaaacatggcaggtaactttcttcgtaacc |
44522236 |
T |
|
| Q |
114 |
ttagcattttcattctcattaaatgtcacccagtaatgttcaatttgattgagtcaagttaaattttctttagggtgggcatggtcttgcctccaatatc |
213 |
Q |
| |
|
|| |||||||||||||||| || ||||| ||| ||| ||| | |||||||| || ||||||||||||||||||| |||| |||||||||| ||| |
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|
| T |
44522237 |
gtatcattttcattctcattctatttcacctagtgatga-caagtctattgagtcgagccaaattttctttagggtgggagtggttttgcctccaagatc |
44522335 |
T |
|
| Q |
214 |
acatttcaggatatcgtggtggaaaatgtgtccaatccaataataattgatcaatactactgtgatccccgaattccatgcaagaatcaggtattgaatt |
313 |
Q |
| |
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||||| ||| ||||| | |||||||||||||||||||||||||||| |||||||||||||| ||| | ||| |||||||||||||||||||||||||| |
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| T |
44522336 |
acattccagaatatcttaatggaaaatgtgtccaatccaataataatagatcaatactactgcgattcacgacatccatgcaagaatcaggtattgaatt |
44522435 |
T |
|
| Q |
314 |
ttaagatatttttgcagggt |
333 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
44522436 |
ttaagatatttttgcagggt |
44522455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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