View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5488_high_2 (Length: 582)
Name: NF5488_high_2
Description: NF5488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5488_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 42036832 - 42037072
Alignment:
| Q |
1 |
aatggttatattgacaagttatgttgtaaagatatcttaattcctccaaatctgttatggaagtaattggctcgataagctccagaaagtcatcgtcggt |
100 |
Q |
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| T |
42036832 |
aatggttatatttacaagttatgttgtaaagatatcttaattcctccaaatctgttatggaagtaattggcttgataagctccagaaagtcatcgtcggt |
42036931 |
T |
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| Q |
101 |
gtagccttggctaagaagattgttgatggtaaaaatcccttgatggaaaccaaattgaatgagtaaggaacatgcatcattgattcttgcttgtcgttta |
200 |
Q |
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| T |
42036932 |
gtagccttggctaagaagattgttgatggtaaaaatcccttgatggaaaccgaattgaatgagtaaggaacatgcatcattgattcttgcttgtcgttta |
42037031 |
T |
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| Q |
201 |
agaagtgattctcctaagccatgaccaacgggagtggagtg |
241 |
Q |
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| T |
42037032 |
agaagtgattctcctaagccatgaccaacgggagtggagtg |
42037072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 198; Significance: 1e-107; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 242 - 470
Target Start/End: Complemental strand, 35589056 - 35588819
Alignment:
| Q |
242 |
tgttatcgactaaactagaatatctcacaattagttacaatttgctactgatccttgttgttctcatcctaatccttattgttcctatcaattagtttag |
341 |
Q |
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| T |
35589056 |
tgttatcgactaaactagaatatctcacaattagttacaatttgctactggtccttgttgttctcatcctaatccttattgttcctatcaattagtttag |
35588957 |
T |
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| Q |
342 |
ctttcctatacattagtttagcttcctcttagtttggtttttctgttaatacttgtacag---------ctgtgatttattcatcaatatacataacaaa |
432 |
Q |
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| T |
35588956 |
ctttcctatacattagttcagcttcctcttagtttggtttttctgttaatacttgtacagtatattaacctgtgatttattcatcaatatacataacaaa |
35588857 |
T |
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| Q |
433 |
aacttctatcaatttgctctctgcatactttctttaca |
470 |
Q |
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| T |
35588856 |
aacttctatcaatttgctctctgcatactttctttaca |
35588819 |
T |
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