View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5488_high_3 (Length: 442)
Name: NF5488_high_3
Description: NF5488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5488_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 363; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 8 - 426
Target Start/End: Complemental strand, 16576076 - 16575659
Alignment:
| Q |
8 |
aagcaaaggagagaaatatttgttaataaaatgaaagagaaagtgtaagcttctttacgacaatacaattcttttgccaatctttacgaccatgcataaa |
107 |
Q |
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| T |
16576076 |
aagcaaaggagagaaatatttataaataaaatgaaagagaaagtgtaagcttctttacgacaatacaattcttttgccaatctttacgaccatgcataaa |
16575977 |
T |
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| Q |
108 |
atacagttacatgataaatttcaagatatattctggggacaaagattgcaacctttatttcctcaattttgttggtgtgaattttttccgtacaactaca |
207 |
Q |
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| T |
16575976 |
atacagttacacgataaatttcaagatatattctggggacaaagattgcaacctttatttcctcaattttgttggtgtgaatttttt-cgtacaactaca |
16575878 |
T |
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| Q |
208 |
agactaatcactcgagttaggtgaaacattaacctctgattaaaattgcaaaaattcttaccgattcatagaatatagccatgtttttatatagaaatta |
307 |
Q |
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|||||||||||||||||||| || || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16575877 |
agactaatcactcgagttagatggaatattaacctctgattaaaattgcaaaaattcttaccgattcatagaatatagccatgtttttatatagaaatta |
16575778 |
T |
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| Q |
308 |
aaactatacacaaacttaagataaatgcacnnnnnnnnataataaagtcaacttctaatcactttagtgatatctcttgggcaaacaaaaagttaaagaa |
407 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16575777 |
aaactatacacaaacttaagataaatgcacttttttttataataaagtcaacttctaatcactttagtgatatctcttgggcaaacaaaaagttaaagaa |
16575678 |
T |
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| Q |
408 |
ttgtctttgtagagttaac |
426 |
Q |
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| T |
16575677 |
ttgtctttgtagagttaac |
16575659 |
T |
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