View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5488_high_4 (Length: 362)
Name: NF5488_high_4
Description: NF5488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5488_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 16 - 356
Target Start/End: Complemental strand, 21878523 - 21878183
Alignment:
| Q |
16 |
aagaagcataattatcagcatgttgtttaagatttcccaatctatttgcagaagcactcaacactataaccttttacacaaaaacagttagaattctatt |
115 |
Q |
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| T |
21878523 |
aagaagcataattatcagcatgttgtttaagatttcccaatctatttgcagaagcactcaacactataaccttttacacaaaaacagttagaattctatt |
21878424 |
T |
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| Q |
116 |
taacagaattgtataaagctacgtagcaccaacactcgacaatatgtattgaaagcgtgaacaaatatctgacacatgaacatacaatcatttcaatttt |
215 |
Q |
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| T |
21878423 |
taacagaattgtataaagctacgtagcaccaacactcgacaatatgtattgaaagcgtgaccaaatatctgacacatgaacatacaatcatttcaatttt |
21878324 |
T |
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| Q |
216 |
tcaaactattaccgatgtttgagtctgttcttggtcagtgcatcataggaaaaaagattggtataaaaagaatttacataatctcaatactcacctcctt |
315 |
Q |
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||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21878323 |
tcaaactattaccaatgtttgagtctgtttttggtcagtgcatcataggaaaaaagattggtataaaaagaatttacataatctcaatactcacctcctt |
21878224 |
T |
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| Q |
316 |
aacctcctcttcagataacctaccatctccattcttctcac |
356 |
Q |
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|||||||||||| ||||||||||||||||||||||| |||| |
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| T |
21878223 |
aacctcctcttcggataacctaccatctccattcttgtcac |
21878183 |
T |
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