View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5488_high_5 (Length: 304)

Name: NF5488_high_5
Description: NF5488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5488_high_5
NF5488_high_5
[»] chr1 (10 HSPs)
chr1 (19-258)||(8059756-8059995)
chr1 (67-257)||(6849115-6849304)
chr1 (31-208)||(46796986-46797164)
chr1 (79-265)||(51602392-51602577)
chr1 (191-260)||(6294158-6294227)
chr1 (191-260)||(38168234-38168303)
chr1 (139-238)||(29223972-29224071)
chr1 (247-281)||(8058994-8059028)
chr1 (97-159)||(22065195-22065257)
chr1 (170-238)||(9687618-9687686)
[»] chr8 (5 HSPs)
chr8 (23-268)||(1362887-1363132)
chr8 (97-165)||(44145847-44145915)
chr8 (191-260)||(33373340-33373409)
chr8 (97-159)||(38560612-38560674)
chr8 (194-260)||(45093586-45093652)
[»] chr2 (8 HSPs)
chr2 (19-270)||(24467653-24467903)
chr2 (70-265)||(34354543-34354738)
chr2 (67-207)||(32599745-32599885)
chr2 (191-260)||(24126311-24126380)
chr2 (191-260)||(42866059-42866128)
chr2 (53-157)||(13247454-13247558)
chr2 (97-158)||(17290172-17290233)
chr2 (196-256)||(38073644-38073704)
[»] chr7 (8 HSPs)
chr7 (19-239)||(29350407-29350627)
chr7 (97-165)||(24468643-24468711)
chr7 (97-165)||(24473591-24473659)
chr7 (191-270)||(3237816-3237895)
chr7 (193-260)||(5350136-5350203)
chr7 (191-260)||(46046049-46046118)
chr7 (191-260)||(38110570-38110639)
chr7 (110-163)||(40168494-40168547)
[»] chr6 (7 HSPs)
chr6 (65-270)||(1017040-1017245)
chr6 (55-218)||(2016715-2016878)
chr6 (175-238)||(3704897-3704960)
chr6 (67-165)||(21906287-21906384)
chr6 (217-261)||(20679031-20679075)
chr6 (124-261)||(1222872-1223009)
chr6 (77-113)||(6060306-6060342)
[»] chr5 (11 HSPs)
chr5 (70-208)||(38063533-38063671)
chr5 (31-264)||(31118655-31118888)
chr5 (70-187)||(25968939-25969056)
chr5 (97-261)||(18934196-18934360)
chr5 (97-165)||(4560304-4560372)
chr5 (155-238)||(38557691-38557774)
chr5 (191-260)||(239867-239936)
chr5 (191-256)||(14025077-14025142)
chr5 (119-161)||(25782432-25782474)
chr5 (191-257)||(32386630-32386696)
chr5 (91-159)||(18883518-18883586)
[»] chr3 (9 HSPs)
chr3 (95-270)||(29173865-29174048)
chr3 (97-165)||(54812236-54812304)
chr3 (53-238)||(25662592-25662777)
chr3 (53-238)||(25668997-25669182)
chr3 (53-238)||(25675402-25675587)
chr3 (53-238)||(25682076-25682261)
chr3 (53-238)||(25690380-25690565)
chr3 (97-158)||(42794629-42794690)
chr3 (97-159)||(46428699-46428761)
[»] chr4 (5 HSPs)
chr4 (191-260)||(1217301-1217370)
chr4 (97-165)||(4228314-4228382)
chr4 (53-165)||(27389071-27389183)
chr4 (70-165)||(33927537-33927632)
chr4 (95-149)||(28561308-28561362)


Alignment Details
Target: chr1 (Bit Score: 208; Significance: 1e-114; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 19 - 258
Target Start/End: Complemental strand, 8059995 - 8059756
Alignment:
Q  19 aaagggaacgtcaaaattaatggcaaagcacctgccttggtgtgccgtattcaagagcttttaaagttaaactgacaggtgcaattcaaccatacctagc 118  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||    
T  8059995 aaagggaacgtcaaaattaatggcaaagcacctaccttggtgtgccgtattcaagagcttttaaagttaaactggcaggtgcaattcaaccatacctggc 8059896  T
Q  119 gggagggaaatagaagtgttgattggcttgctaattttagcttttctttagattcctttgacattcatgtcatggagactcctcctagtgaggtttcgag 218  Q
    | |||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| ||||||||||||    
T  8059895 gcgagggaaatagaagtgctgattggcttgctaattttagcttttctttagattcttttcacattcatgtcatggagactcctcctaatgaggtttcgag 8059796  T
Q  219 tctcctttttgatgatatttccagggcttgtatgcctagg 258  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  8059795 tctcctttttgatgatatttccagggcttgtatgcctagg 8059756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 67 - 257
Target Start/End: Original strand, 6849115 - 6849304
Alignment:
Q  67 attcaagagcttttaaagttaaactgacaggtgcaattcaaccatacctagcgggagggaaatagaagtgttgattggcttgctaattttagcttttctt 166  Q
    |||||||||||||||||||||||||| |||||||| ||||| ||||| ||||||||||| ||||||||||  ||||| || ||||||||||||||||||     
T  6849115 attcaagagcttttaaagttaaactggcaggtgcatttcaatcatacatagcgggaggggaatagaagtgcggattgactagctaattttagcttttctc 6849214  T
Q  167 tagattcctttgacattcatgtcatggagactcctcctagtgaggtttcgagtctcctttttgatgatatttccagggcttgtatgcctag 257  Q
    | ||||| ||| | ||| |||| |   || || || |||||| | |||| |||||||||||||||||||||||| || |||| ||| ||||    
T  6849215 ttgattcttttcaaattaatgttaaaaag-cttcttctagtgggatttcaagtctcctttttgatgatatttccgggacttggatgtctag 6849304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 31 - 208
Target Start/End: Original strand, 46796986 - 46797164
Alignment:
Q  31 aaaattaatggcaaagcacctgccttggtgtgccgtattcaagagcttttaaagttaaactgacaggtgcaattcaaccatacctagcgggagggaaata 130  Q
    ||||| ||||||||| ||||  | ||| || ||||||| |||   ||||||||||| ||||   ||||||| ||||||||||| | ||||  ||||||||    
T  46796986 aaaatcaatggcaaatcacccactttgatgcgccgtatacaaatccttttaaagttgaactagtaggtgcatttcaaccatacatggcggaggggaaata 46797085  T
Q  131 gaagtg-ttgattggcttgctaattttagcttttctttagattcctttgacattcatgtcatggagactcctcctagtg 208  Q
    |||||| |||||||||| |||||||||||||| |||||||| || ||| |||||||||| ||| |||||||||||||||    
T  46797086 gaagtggttgattggctggctaattttagcttctctttagactcttttaacattcatgttatgaagactcctcctagtg 46797164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 79 - 265
Target Start/End: Complemental strand, 51602577 - 51602392
Alignment:
Q  79 ttaaagttaaactgacaggtgcaattcaaccatacctagcgggagggaaatagaagtgttgattggcttgctaattttagcttttctttagattcctttg 178  Q
    |||||||| ||||||||| |||| ||||| ||||||| |||||||||||||| ||||| ||||||| |  ||||||||||||| ||||| || |  |||     
T  51602577 ttaaagttgaactgacag-tgcatttcaatcatacctggcgggagggaaataaaagtgctgattggatgactaattttagcttctctttggactatttta 51602479  T
Q  179 acattcatgtcatggagactcctcctagtgaggtttcgagtctcctttttgatgatatttccagggcttgtatgcctaggaatattc 265  Q
    || ||||||| ||||||||||||||||||| | | |  |||||| ||||||||||  |||| |||||||  |||||||| |||||||    
T  51602478 actttcatgttatggagactcctcctagtgggatcttaagtctcatttttgatgacttttctagggcttacatgcctagaaatattc 51602392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 191 - 260
Target Start/End: Original strand, 6294158 - 6294227
Alignment:
Q  191 tggagactcctcctagtgaggtttcgagtctcctttttgatgatatttccagggcttgtatgcctaggaa 260  Q
    |||||||||||||||||||| ||  ||||||  | ||||||||||||||| ||||||| |||||||||||    
T  6294158 tggagactcctcctagtgagcttcagagtcttttgtttgatgatatttccggggcttgcatgcctaggaa 6294227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 191 - 260
Target Start/End: Complemental strand, 38168303 - 38168234
Alignment:
Q  191 tggagactcctcctagtgaggtttcgagtctcctttttgatgatatttccagggcttgtatgcctaggaa 260  Q
    |||||||||||||||||||| ||  ||||||  | ||||||||||||||| ||||||| |||||||||||    
T  38168303 tggagactcctcctagtgagcttcagagtcttttgtttgatgatatttccggggcttgcatgcctaggaa 38168234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 139 - 238
Target Start/End: Original strand, 29223972 - 29224071
Alignment:
Q  139 gattggcttgctaattttagcttttctttagattcctttgacattcatgtcatggagactcctcctagtgaggtttcgagtctcctttttgatgatattt 238  Q
    |||||||| || ||| |||| |||||| | || || ||| |||||||||  ||||| ||||||||||||||||| || |||||||||||| |||| ||||    
T  29223972 gattggctagccaatcttagtttttctatggactcttttaacattcatgctatggatactcctcctagtgaggtctctagtctccttttttatgacattt 29224071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 247 - 281
Target Start/End: Complemental strand, 8059028 - 8058994
Alignment:
Q  247 tgtatgcctaggaatattcatatataactatgtag 281  Q
    |||||||||||||||||||||||||||||||||||    
T  8059028 tgtatgcctaggaatattcatatataactatgtag 8058994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 97 - 159
Target Start/End: Complemental strand, 22065257 - 22065195
Alignment:
Q  97 gtgcaattcaaccatacctagcgggagggaaatagaagtgttgattggcttgctaattttagc 159  Q
    |||||| |||||||||| | ||| || |||||||||||||  |||||||||||||||||||||    
T  22065257 gtgcaaatcaaccatacttggcgtgaaggaaatagaagtgccgattggcttgctaattttagc 22065195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 170 - 238
Target Start/End: Original strand, 9687618 - 9687686
Alignment:
Q  170 attcctttgacattcatgtcatggagactcctcctagtgaggtttcgagtctcctttttgatgatattt 238  Q
    |||| ||| ||||| |||| || |||||||||  ||||||||| |||||||||| ||||||||||||||    
T  9687618 attcttttaacattgatgttatagagactccttatagtgaggtctcgagtctcccttttgatgatattt 9687686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 174; Significance: 1e-93; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 23 - 268
Target Start/End: Original strand, 1362887 - 1363132
Alignment:
Q  23 ggaacgtcaaaattaatggcaaagcacctgccttggtgtgccgtattcaagagcttttaaagttaaactgacaggtgcaattcaaccatacctagcggga 122  Q
    ||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||  ||| |||||||||||||||||| || |||    
T  1362887 ggaacgtcaaaattaatggcaaagcacccaccttggtgtgccgtattcaagagcttttaaagttaaacttgcagttgcaattcaaccatacctggcagga 1362986  T
Q  123 gggaaatagaagtgttgattggcttgctaattttagcttttctttagattcctttgacattcatgtcatggagactcctcctagtgaggtttcgagtctc 222  Q
    |||||||||||||| ||||||||||||||||||||| || | |||| |||| |||||||||||||||||||||||||||||||||||| |||||||||||    
T  1362987 gggaaatagaagtgctgattggcttgctaattttagattctatttaaattcttttgacattcatgtcatggagactcctcctagtgagatttcgagtctc 1363086  T
Q  223 ctttttgatgatatttccagggcttgtatgcctaggaatattcata 268  Q
     ||||| ||||||||| || ||||||||||||||||||||||||||    
T  1363087 tttttttatgatattttcaaggcttgtatgcctaggaatattcata 1363132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 97 - 165
Target Start/End: Original strand, 44145847 - 44145915
Alignment:
Q  97 gtgcaattcaaccatacctagcgggagggaaatagaagtgttgattggcttgctaattttagcttttct 165  Q
    |||||| |||||||||| | ||| || ||||||||||||| |||||| ||||||||||||||| |||||    
T  44145847 gtgcaaatcaaccatacttggcgtgaaggaaatagaagtgctgattgacttgctaattttagcatttct 44145915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 191 - 260
Target Start/End: Original strand, 33373340 - 33373409
Alignment:
Q  191 tggagactcctcctagtgaggtttcgagtctcctttttgatgatatttccagggcttgtatgcctaggaa 260  Q
    |||||||||||||||||||| ||  ||||||  | ||||||||||||||| | ||||| |||||||||||    
T  33373340 tggagactcctcctagtgagcttcagagtcttttgtttgatgatatttccggagcttgcatgcctaggaa 33373409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 97 - 159
Target Start/End: Complemental strand, 38560674 - 38560612
Alignment:
Q  97 gtgcaattcaaccatacctagcgggagggaaatagaagtgttgattggcttgctaattttagc 159  Q
    |||||| |||||||||| | ||  || |||||||||||||  |||||||||||||||||||||    
T  38560674 gtgcaaatcaaccatacttggcacgaaggaaatagaagtgccgattggcttgctaattttagc 38560612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 194 - 260
Target Start/End: Original strand, 45093586 - 45093652
Alignment:
Q  194 agactcctcctagtgaggtttcgagtctcctttttgatgatatttccagggcttgtatgcctaggaa 260  Q
    ||||||| ||||||||| ||  ||||||  | ||||||||||||||| ||||||| |||||||||||    
T  45093586 agactccccctagtgagcttcagagtcttttgtttgatgatatttccggggcttgcatgcctaggaa 45093652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 132; Significance: 1e-68; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 19 - 270
Target Start/End: Original strand, 24467653 - 24467903
Alignment:
Q  19 aaagggaacgtcaaaattaatggcaaagcacctgccttggtgtgccgtattcaagagcttttaaagttaaactgacaggtgcaattcaaccatacctagc 118  Q
    |||| |||||||||||||||||| |||||| |  |||||||||||||||||||| |||||||||||||||| |   ||||||||||||||||||  |  |    
T  24467653 aaagagaacgtcaaaattaatgggaaagcatcctccttggtgtgccgtattcaatagcttttaaagttaaattagtaggtgcaattcaaccatatttgac 24467752  T
Q  119 gggagggaaatagaagtgttgattggcttgctaattttagcttttctttagattcctttgacattcatgtcatggagactcctcctagtgaggtttcgag 218  Q
    ||||||||||||||||||||||||||||| ||||||||| ||| |||||| |||| |||||||||||||| ||||| |||||||||||||||||||||||    
T  24467753 gggagggaaatagaagtgttgattggcttcctaattttaccttctctttaaattcttttgacattcatgtaatggatactcctcctagtgaggtttcgag 24467852  T
Q  219 tctcctttttgatgatatttccagggcttgtatgcctaggaatattcatata 270  Q
    |||| ||||| || ||||||   ||||||||||||| |||||||||| ||||    
T  24467853 tctcattttt-ataatatttatggggcttgtatgcccaggaatattcgtata 24467903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 70 - 265
Target Start/End: Complemental strand, 34354738 - 34354543
Alignment:
Q  70 caagagcttttaaagttaaactgacaggtgcaattcaaccatacctagcgggagggaaatagaagtgttgattggcttgctaattttagcttttctttag 169  Q
    ||||| ||| ||||||| ||||  |||||||| ||||| ||||| | |||||||||||||||||||| ||||||| | |||||||||| ||| ||||| |    
T  34354738 caagaccttctaaagttgaactagcaggtgcatttcaatcatacatggcgggagggaaatagaagtgctgattggatggctaattttaacttctctttgg 34354639  T
Q  170 attcctttgacattcatgtcatggagactcctcctagtgaggtttcgagtctcctttttgatgatatttccagggcttgtatgcctaggaatattc 265  Q
    | || ||| |||||||||| ||||||||||||||||||| | | |  |||||| ||||| ||||  ||||  |||||||  ||||||| |||||||    
T  34354638 actcttttcacattcatgttatggagactcctcctagtgggatcttaagtctcattttttatgacttttctggggcttgcgtgcctagaaatattc 34354543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 67 - 207
Target Start/End: Complemental strand, 32599885 - 32599745
Alignment:
Q  67 attcaagagcttttaaagttaaactgacaggtgcaattcaaccatacctagcgggagggaaatagaagtgttgattggcttgctaattttagcttttctt 166  Q
    |||||||||||||||||||| || || |||||||| ||| | ||||| | |||||| |  ||||||||||| |||||||| ||||||||||||||||||     
T  32599885 attcaagagcttttaaagttgaattggcaggtgcatttctatcatacatggcgggatgagaatagaagtgtcgattggctagctaattttagcttttctc 32599786  T
Q  167 tagattcctttgacattcatgtcatggagactcctcctagt 207  Q
    |  |||| ||| | |||||||| ||||||||||||||||||    
T  32599785 ttaattcgtttcaaattcatgttatggagactcctcctagt 32599745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 191 - 260
Target Start/End: Complemental strand, 24126380 - 24126311
Alignment:
Q  191 tggagactcctcctagtgaggtttcgagtctcctttttgatgatatttccagggcttgtatgcctaggaa 260  Q
    |||||||||| ||||||||| ||  ||||||  | ||||||||||||||||||||||| |||||||||||    
T  24126380 tggagactccccctagtgagcttcagagtcttttgtttgatgatatttccagggcttgcatgcctaggaa 24126311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 191 - 260
Target Start/End: Original strand, 42866059 - 42866128
Alignment:
Q  191 tggagactcctcctagtgaggtttcgagtctcctttttgatgatatttccagggcttgtatgcctaggaa 260  Q
    |||||||||||||||||||| ||  ||||||  | ||||||||||||||| | ||||| |||||||||||    
T  42866059 tggagactcctcctagtgagcttcagagtcttttgtttgatgatatttccggagcttgcatgcctaggaa 42866128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 53 - 157
Target Start/End: Complemental strand, 13247558 - 13247454
Alignment:
Q  53 ccttggtgtgccgtattcaagagcttttaaagttaaactgacaggtgcaattcaaccatacctagcgggagggaaatagaagtgttgattggcttgctaa 152  Q
    |||| ||||| ||||| || || |||||||||||||| ||  ||||||||||||||| ||| | || ||||| ||||| || ||||||||| ||| |||     
T  13247558 ccttagtgtgtcgtatgcatgatcttttaaagttaaattggtaggtgcaattcaaccgtacttggccggaggaaaataaaattgttgattgacttactag 13247459  T
Q  153 tttta 157  Q
    |||||    
T  13247458 tttta 13247454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 97 - 158
Target Start/End: Original strand, 17290172 - 17290233
Alignment:
Q  97 gtgcaattcaaccatacctagcgggagggaaatagaagtgttgattggcttgctaattttag 158  Q
    |||||| |||||||||  | ||| || |||||||||||||  ||||||||||||||||||||    
T  17290172 gtgcaaatcaaccatatttggcgtgaaggaaatagaagtgccgattggcttgctaattttag 17290233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 196 - 256
Target Start/End: Complemental strand, 38073704 - 38073644
Alignment:
Q  196 actcctcctagtgaggtttcgagtctcctttttgatgatatttccagggcttgtatgccta 256  Q
    |||||||||||||||||||| |||||| |||||  ||||||| | | |||||| |||||||    
T  38073704 actcctcctagtgaggtttcaagtctcattttttgtgatattccgaaggcttgcatgccta 38073644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 121; Significance: 5e-62; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 19 - 239
Target Start/End: Original strand, 29350407 - 29350627
Alignment:
Q  19 aaagggaacgtcaaaattaatggcaaagcacctgccttggtgtgccgtattcaagagcttttaaagttaaactgacaggtgcaattcaaccatacctagc 118  Q
    ||||||||| ||||||||||||||||||||||  |||||||||| | ||||||||||||||||||||||||||  ||||||||||||||| || |||| |    
T  29350407 aaagggaacttcaaaattaatggcaaagcacccaccttggtgtgtcatattcaagagcttttaaagttaaactcgcaggtgcaattcaactattcctaac 29350506  T
Q  119 gggagggaaatagaagtgttgattggcttgctaattttagcttttctttagattcctttgacattcatgtcatggagactcctcctagtgaggtttcgag 218  Q
    || |||||||||||||||||||||||||| |||||||||  || |||||| |||| ||| |||||||||| ||  ||| |||||||||||||||||| ||    
T  29350507 ggaagggaaatagaagtgttgattggcttcctaattttactttctctttatattcttttaacattcatgttataaagaatcctcctagtgaggtttcaag 29350606  T
Q  219 tctcctttttgatgatatttc 239  Q
    |||| ||||| ||||||||||    
T  29350607 tctcattttttatgatatttc 29350627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 97 - 165
Target Start/End: Original strand, 24468643 - 24468711
Alignment:
Q  97 gtgcaattcaaccatacctagcgggagggaaatagaagtgttgattggcttgctaattttagcttttct 165  Q
    |||||| |||||||||| | ||| || |||||||||||||  ||||||||||||||||||||| |||||    
T  24468643 gtgcaaatcaaccatacttggcgtgaaggaaatagaagtgccgattggcttgctaattttagcatttct 24468711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 97 - 165
Target Start/End: Original strand, 24473591 - 24473659
Alignment:
Q  97 gtgcaattcaaccatacctagcgggagggaaatagaagtgttgattggcttgctaattttagcttttct 165  Q
    |||||| |||||||||| | ||| || |||||||||||||  ||||||||||||||||||||| |||||    
T  24473591 gtgcaaatcaaccatacttggcgtgaaggaaatagaagtgccgattggcttgctaattttagcatttct 24473659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 191 - 270
Target Start/End: Complemental strand, 3237895 - 3237816
Alignment:
Q  191 tggagactcctcctagtgaggtttcgagtctcctttttgatgatatttccagggcttgtatgcctaggaatattcatata 270  Q
    |||||||||||||||||||| ||   || ||||||||| ||||||||||  |||||||||| ||||| ||||| ||||||    
T  3237895 tggagactcctcctagtgagcttcgaagactccttttttatgatatttctggggcttgtattcctagaaatatacatata 3237816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 193 - 260
Target Start/End: Original strand, 5350136 - 5350203
Alignment:
Q  193 gagactcctcctagtgaggtttcgagtctcctttttgatgatatttccagggcttgtatgcctaggaa 260  Q
    |||||||| ||||||||| ||  ||||||  | |||||||||||||||||| ||||||||||||||||    
T  5350136 gagactccccctagtgagcttcagagtcttttgtttgatgatatttccaggacttgtatgcctaggaa 5350203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 191 - 260
Target Start/End: Original strand, 46046049 - 46046118
Alignment:
Q  191 tggagactcctcctagtgaggtttcgagtctcctttttgatgatatttccagggcttgtatgcctaggaa 260  Q
    |||||||||||||||||||| ||  ||||||  | ||||||||||||||| ||||||| ||| |||||||    
T  46046049 tggagactcctcctagtgagcttcagagtcttttgtttgatgatatttccggggcttgcatgtctaggaa 46046118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 260
Target Start/End: Complemental strand, 38110639 - 38110570
Alignment:
Q  191 tggagactcctcctagtgaggtttcgagtctcctttttgatgatatttccagggcttgtatgcctaggaa 260  Q
    |||||||||| ||||||||| ||  ||||||  | ||||||||||||||  ||||||| |||||||||||    
T  38110639 tggagactccacctagtgagcttcagagtcttttgtttgatgatatttctggggcttgcatgcctaggaa 38110570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 163
Target Start/End: Original strand, 40168494 - 40168547
Alignment:
Q  110 atacctagcgggagggaaatagaagtgttgattggcttgctaattttagctttt 163  Q
    |||||||| |||||||||||| |||||| ||||| |||||||| |||| |||||    
T  40168494 atacctagagggagggaaataaaagtgtcgattgacttgctaactttaactttt 40168547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 98; Significance: 3e-48; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 65 - 270
Target Start/End: Original strand, 1017040 - 1017245
Alignment:
Q  65 gtattcaagagcttttaaagttaaactgacaggtgcaattcaaccatacctagcgggagggaaatagaagtgttgattggcttgctaattttagcttttc 164  Q
    ||||||||||| ||| ||||||||| | |||||||||||||||| |||| | |  | || |||||||||||| |||||| ||||||||||| | ||| ||    
T  1017040 gtattcaagagatttaaaagttaaattaacaggtgcaattcaactatacatggtagaagagaaatagaagtgatgattgacttgctaatttcaacttctc 1017139  T
Q  165 tttagattcctttgacattcatgtcatggagactcctcctagtgaggtttcgagtctcctttttgatgatatttccagggcttgtatgcctaggaatatt 264  Q
    |||| |||| |||||||||||||||||||| ||||||||||||||| ||||||||||||||||| ||||||||||  | |||||| ||||||  ||||||    
T  1017140 tttaaattcttttgacattcatgtcatggaaactcctcctagtgagatttcgagtctccttttttatgatatttctggagcttgtttgcctaaaaatatt 1017239  T
Q  265 catata 270  Q
    ||||||    
T  1017240 catata 1017245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 55 - 218
Target Start/End: Original strand, 2016715 - 2016878
Alignment:
Q  55 ttggtgtgccgtattcaagagcttttaaagttaaactgacaggtgcaattcaaccatacctagcgggagggaaatagaagtgttgattggcttgctaatt 154  Q
    |||||||| ||||||||||||||||||||||||||| || ||||||||||||||||||| || ||| ||  |||||||| ||||||||| || | |||||    
T  2016715 ttggtgtgtcgtattcaagagcttttaaagttaaaccgataggtgcaattcaaccatacttaacggaagaaaaatagaattgttgattgactagataatt 2016814  T
Q  155 ttagcttttctttagattcctttgacattcatgtcatggagactcctcctagtgaggtttcgag 218  Q
    | | ||| |||||| |||| || ||||||||||| ||| ||||||||| || ||| ||||||||    
T  2016815 tcaacttctctttaaattctttcgacattcatgtgatgaagactcctcataatgatgtttcgag 2016878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 175 - 238
Target Start/End: Complemental strand, 3704960 - 3704897
Alignment:
Q  175 tttgacattcatgtcatggagactcctcctagtgaggtttcgagtctcctttttgatgatattt 238  Q
    |||||||||||||| |||||||||||| ||||| ||||||| ||||||||||||||||| ||||    
T  3704960 tttgacattcatgttatggagactccttctagtaaggtttcaagtctcctttttgatgaaattt 3704897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 67 - 165
Target Start/End: Complemental strand, 21906384 - 21906287
Alignment:
Q  67 attcaagagcttttaaagttaaactgacaggtgcaattcaaccatacctagcgggagggaaatagaagtgttgattggcttgctaattttagcttttct 165  Q
    |||||| ||||||||||||| || ||||||||||| ||||| ||||| | || |||||| ||||||||||  ||||| |  ||||||||||||||||||    
T  21906384 attcaaaagcttttaaagtttaattgacaggtgcatttcaatcatacatggcaggaggggaatagaagtgccgattgac-cgctaattttagcttttct 21906287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 217 - 261
Target Start/End: Complemental strand, 20679075 - 20679031
Alignment:
Q  217 agtctcctttttgatgatatttccagggcttgtatgcctaggaat 261  Q
    |||||||| ||||||||||||||| ||||||| ||||||||||||    
T  20679075 agtctcctatttgatgatatttccggggcttgcatgcctaggaat 20679031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 124 - 261
Target Start/End: Complemental strand, 1223009 - 1222872
Alignment:
Q  124 ggaaatagaagtgttgattggcttgctaattttagcttttctttagattcctttgacattca-tgtcatggagactcctcctagtgaggtttcgagtctc 222  Q
    |||||||||||||  ||||||||||||||||||||| ||||| | || || |||||  || | | |  ||||||||||||||| |||| ||   |  |||    
T  1223009 ggaaatagaagtgccgattggcttgctaattttagcatttctgt-gaatcatttgaatttgattattttggagactcctcctattgagcttcgaaagctc 1222911  T
Q  223 ctttttgatgatatttccagggcttgtatgcctaggaat 261  Q
     | ||||||||||||||| ||||||| ||||||||||||    
T  1222910 atgtttgatgatatttccggggcttgcatgcctaggaat 1222872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 77 - 113
Target Start/End: Complemental strand, 6060342 - 6060306
Alignment:
Q  77 ttttaaagttaaactgacaggtgcaattcaaccatac 113  Q
    ||||||||| |||||||||| ||||||||||||||||    
T  6060342 ttttaaagtaaaactgacagatgcaattcaaccatac 6060306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 71; Significance: 4e-32; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 70 - 208
Target Start/End: Original strand, 38063533 - 38063671
Alignment:
Q  70 caagagcttttaaagttaaactgacaggtgcaattcaaccatacctagcgggagggaaatagaagtgttgattggcttgctaattttagcttttctttag 169  Q
    ||||| |||||||| || ||||  |||||||| ||||| ||||||| |||||||||||||||||||||||||||| | |||||||||||||| ||||| |    
T  38063533 caagaccttttaaaattgaactagcaggtgcatttcaatcatacctggcgggagggaaatagaagtgttgattggatggctaattttagcttctctttgg 38063632  T
Q  170 attcctttgacattcatgtcatggagactcctcctagtg 208  Q
    | || ||| |||||||||| |||||||||||||| ||||    
T  38063633 actcttttaacattcatgttatggagactcctcccagtg 38063671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 31 - 264
Target Start/End: Original strand, 31118655 - 31118888
Alignment:
Q  31 aaaattaatggcaaagcacctgccttggtgtgccgtattcaagagcttttaaagttaaactgacaggtgcaattcaaccatacctagcgggagggaaata 130  Q
    ||||||||||||||| |||||  |||| || | |  || ||||  ||||||||||| |||| ||| ||||| ||||| ||||  | | |||| |||||||    
T  31118655 aaaattaatggcaaaccacctatcttgatgcgtcacatacaaggccttttaaagttgaacttacatgtgcatttcaatcatatgtggagggatggaaata 31118754  T
Q  131 gaagtgttgattggcttgctaattttagcttttctttagattcctttgacattcatgtcatggagactcctcctagtgaggtttcgagtctcctttttga 230  Q
    ||||||||||||| ||  ||||||||||||| ||||| || || ||| |||||||||| ||||||||||||||||||| | | |  |||||||||||| |    
T  31118755 gaagtgttgattgactgactaattttagcttctctttggactcttttaacattcatgttatggagactcctcctagtgggatcttaagtctcctttttta 31118854  T
Q  231 tgatatttccagggcttgtatgcctaggaatatt 264  Q
    ||| |||||  ||||||| || || |||||||||    
T  31118855 tgacatttctggggcttgcataccaaggaatatt 31118888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 70 - 187
Target Start/End: Complemental strand, 25969056 - 25968939
Alignment:
Q  70 caagagcttttaaagttaaactgacaggtgcaattcaaccatacctagcgggagggaaatagaagtgttgattggcttgctaattttagcttttctttag 169  Q
    ||||| ||||||||||| ||||| |||||||| ||||| |||||||  ||||||||||||||||||| ||||||| | |||||||||||||| ||||| |    
T  25969056 caagaccttttaaagttgaactggcaggtgcatttcaatcatacctgacgggagggaaatagaagtgctgattggatggctaattttagcttctctttgg 25968957  T
Q  170 attcctttgacattcatg 187  Q
    | || ||| |||||||||    
T  25968956 actcttttaacattcatg 25968939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 97 - 261
Target Start/End: Original strand, 18934196 - 18934360
Alignment:
Q  97 gtgcaattcaaccatacctagcgggagggaaatagaagtgttgattggcttgctaattttagcttttctttagattcctttgacattca-tgtcatggag 195  Q
    |||||| |||||||||| | ||| || |||||||||||||  ||||||||||||||||||||| ||||| | || || |||||  || | | |  |||||    
T  18934196 gtgcaaatcaaccatacttggcgtgaaggaaatagaagtgccgattggcttgctaattttagcatttctgt-gaatcatttgaatttgattattttggag 18934294  T
Q  196 actcctcctagtgaggtttcgagtctcctttttgatgatatttccagggcttgtatgcctaggaat 261  Q
    |||||||||| |||| ||   |  ||| | ||||||||||||||| ||||||| ||||||||||||    
T  18934295 actcctcctattgagcttcgaaagctcatgtttgatgatatttccggggcttgcatgcctaggaat 18934360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 97 - 165
Target Start/End: Complemental strand, 4560372 - 4560304
Alignment:
Q  97 gtgcaattcaaccatacctagcgggagggaaatagaagtgttgattggcttgctaattttagcttttct 165  Q
    |||||| |||||||||| | ||| || ||||||||||||| |||||| ||||||||||||||| |||||    
T  4560372 gtgcaaatcaaccatacttggcgtgaaggaaatagaagtgctgattgacttgctaattttagcatttct 4560304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 155 - 238
Target Start/End: Original strand, 38557691 - 38557774
Alignment:
Q  155 ttagcttttctttagattcctttgacattcatgtcatggagactcctcctagtgaggtttcgagtctcctttttgatgatattt 238  Q
    |||| |||||| ||||||| ||| ||| |||||| |||||||| ||||||||||||||||| | | | |||||| |||||||||    
T  38557691 ttagtttttctctagattcttttaacaatcatgttatggagacgcctcctagtgaggtttctattattctttttaatgatattt 38557774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 191 - 260
Target Start/End: Complemental strand, 239936 - 239867
Alignment:
Q  191 tggagactcctcctagtgaggtttcgagtctcctttttgatgatatttccagggcttgtatgcctaggaa 260  Q
    |||||||||||||||||||| ||  ||||||  | ||||||||||||||| | ||||| |||||||||||    
T  239936 tggagactcctcctagtgagcttcagagtcttttgtttgatgatatttccggagcttgcatgcctaggaa 239867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 191 - 256
Target Start/End: Original strand, 14025077 - 14025142
Alignment:
Q  191 tggagactcctcctagtgaggtttcgagtctcctttttgatgatatttccagggcttgtatgccta 256  Q
    |||||||||||||||||||| ||  ||||||  | ||||||||||||||| ||||||| |||||||    
T  14025077 tggagactcctcctagtgagcttcagagtcttttgtttgatgatatttccggggcttgcatgccta 14025142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 119 - 161
Target Start/End: Original strand, 25782432 - 25782474
Alignment:
Q  119 gggagggaaatagaagtgttgattggcttgctaattttagctt 161  Q
    |||||||||||||||||| ||||||| | ||||||||||||||    
T  25782432 gggagggaaatagaagtgctgattggttggctaattttagctt 25782474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 191 - 257
Target Start/End: Original strand, 32386630 - 32386696
Alignment:
Q  191 tggagactcctcctagtgaggtttcgagtctcctttttgatgatatttccagggcttgtatgcctag 257  Q
    |||||||||| ||||||||| ||  ||||||  | ||||||||||||||| || |||||||||||||    
T  32386630 tggagactccccctagtgagcttcagagtcttttgtttgatgatatttccgggacttgtatgcctag 32386696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 91 - 159
Target Start/End: Original strand, 18883518 - 18883586
Alignment:
Q  91 tgacaggtgcaattcaaccatacctagcgggagggaaatagaagtgttgattggcttgctaattttagc 159  Q
    ||||| |||||| |||||||||| | ||| || |||||||||  ||  |||||||||||||||||||||    
T  18883518 tgacatgtgcaaatcaaccatacttggcgcgaaggaaatagatatgccgattggcttgctaattttagc 18883586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 95 - 270
Target Start/End: Original strand, 29173865 - 29174048
Alignment:
Q  95 aggtgcaattcaaccatacctagcgggagggaaatagaagtgttgattggcttgctaattttagcttttctttagattccttt--------gacattcat 186  Q
    ||||||| ||||||||||  |  | |||| ||||||||||| |||||| ||||||||||||||  || |||||| |||| |||        |||||| ||    
T  29173865 aggtgcagttcaaccatatttgcccggagagaaatagaagtattgattagcttgctaattttaatttctctttaaattcttttattcttttgacattaat 29173964  T
Q  187 gtcatggagactcctcctagtgaggtttcgagtctcctttttgatgatatttccagggcttgtatgcctaggaatattcatata 270  Q
    |||||||||||||||| || ||||||||| |||||| ||||| |||||| ||   |||||||||||||||| ||||||||||||    
T  29173965 gtcatggagactcctcttattgaggtttcaagtctcattttttatgataattatggggcttgtatgcctagaaatattcatata 29174048  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 97 - 165
Target Start/End: Complemental strand, 54812304 - 54812236
Alignment:
Q  97 gtgcaattcaaccatacctagcgggagggaaatagaagtgttgattggcttgctaattttagcttttct 165  Q
    |||||| |||||||||| | ||| || |||||||||||||  ||||||||||||||||||||| |||||    
T  54812304 gtgcaaatcaaccatacttggcgtgaaggaaatagaagtgccgattggcttgctaattttagcatttct 54812236  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 53 - 238
Target Start/End: Original strand, 25662592 - 25662777
Alignment:
Q  53 ccttggtgtgccgtattcaagagcttttaaagttaaactgacaggtgcaattcaaccatacctagcgggagggaaatagaagtgttgattggcttgctaa 152  Q
    |||||||| ||||||| || ||||| |||||||| || || | |||||| ||||| ||||| | ||| || ||||| |  |||| ||||||| |  ||||    
T  25662592 ccttggtgcgccgtatacatgagctcttaaagttgaattggctggtgcatttcaatcatacatggcgagaaggaaacacgagtgctgattgggtacctaa 25662691  T
Q  153 ttttagcttttctttagattcctttgacattcatgtcatggagactcctcctagtgaggtttcgagtctcctttttgatgatattt 238  Q
    | |||  |||||| || | |  ||| |||||||||| ||||| || |||||||||||||| || || ||||||||| |||| ||||    
T  25662692 tcttaatttttctatatactattttaacattcatgttatggatacacctcctagtgaggtctctagcctccttttttatgacattt 25662777  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 53 - 238
Target Start/End: Original strand, 25668997 - 25669182
Alignment:
Q  53 ccttggtgtgccgtattcaagagcttttaaagttaaactgacaggtgcaattcaaccatacctagcgggagggaaatagaagtgttgattggcttgctaa 152  Q
    |||||||| ||||||| || ||||| |||||||| || || | |||||| ||||| ||||| | ||| || ||||| |  |||| ||||||| |  ||||    
T  25668997 ccttggtgcgccgtatacatgagctcttaaagttgaattggctggtgcatttcaatcatacatggcgagaaggaaacacgagtgctgattgggtacctaa 25669096  T
Q  153 ttttagcttttctttagattcctttgacattcatgtcatggagactcctcctagtgaggtttcgagtctcctttttgatgatattt 238  Q
    | |||  |||||| || | |  ||| |||||||||| ||||| || |||||||||||||| || || ||||||||| |||| ||||    
T  25669097 tcttaatttttctatatactattttaacattcatgttatggatacacctcctagtgaggtctctagcctccttttttatgacattt 25669182  T

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Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 53 - 238
Target Start/End: Original strand, 25675402 - 25675587
Alignment:
Q  53 ccttggtgtgccgtattcaagagcttttaaagttaaactgacaggtgcaattcaaccatacctagcgggagggaaatagaagtgttgattggcttgctaa 152  Q
    |||||||| ||||||| || ||||| |||||||| || || | |||||| ||||| ||||| | ||| || ||||| |  |||| ||||||| |  ||||    
T  25675402 ccttggtgcgccgtatacatgagctcttaaagttgaattggctggtgcatttcaatcatacatggcgagaaggaaacacgagtgctgattgggtacctaa 25675501  T
Q  153 ttttagcttttctttagattcctttgacattcatgtcatggagactcctcctagtgaggtttcgagtctcctttttgatgatattt 238  Q
    | |||  |||||| || | |  ||| |||||||||| ||||| || |||||||||||||| || || ||||||||| |||| ||||    
T  25675502 tcttaatttttctatatactattttaacattcatgttatggatacacctcctagtgaggtctctagcctccttttttatgacattt 25675587  T

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Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 53 - 238
Target Start/End: Original strand, 25682076 - 25682261
Alignment:
Q  53 ccttggtgtgccgtattcaagagcttttaaagttaaactgacaggtgcaattcaaccatacctagcgggagggaaatagaagtgttgattggcttgctaa 152  Q
    |||||||| ||||||| || ||||| |||||||| || || | |||||| ||||| ||||| | ||| || ||||| |  |||| ||||||| |  ||||    
T  25682076 ccttggtgcgccgtatacatgagctcttaaagttgaattggctggtgcatttcaatcatacatggcgagaaggaaacacgagtgctgattgggtacctaa 25682175  T
Q  153 ttttagcttttctttagattcctttgacattcatgtcatggagactcctcctagtgaggtttcgagtctcctttttgatgatattt 238  Q
    | |||  |||||| || | |  ||| |||||||||| ||||| || |||||||||||||| || || ||||||||| |||| ||||    
T  25682176 tcttaatttttctatatactattttaacattcatgttatggatacacctcctagtgaggtctctagcctccttttttatgacattt 25682261  T

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Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 53 - 238
Target Start/End: Original strand, 25690380 - 25690565
Alignment:
Q  53 ccttggtgtgccgtattcaagagcttttaaagttaaactgacaggtgcaattcaaccatacctagcgggagggaaatagaagtgttgattggcttgctaa 152  Q
    |||||||| ||||||| || ||||| |||||||| || || | |||||| ||||| ||||| | ||| || ||||| |  |||| ||||||| |  ||||    
T  25690380 ccttggtgcgccgtatacatgagctcttaaagttgaattggctggtgcatttcaatcatacatggcgagaaggaaacacgagtgctgattgggtacctaa 25690479  T
Q  153 ttttagcttttctttagattcctttgacattcatgtcatggagactcctcctagtgaggtttcgagtctcctttttgatgatattt 238  Q
    | |||  |||||| || | |  ||| |||||||||| ||||| || |||||||||||||| || || ||||||||| |||| ||||    
T  25690480 tcttaatttttctatatactattttaacattcatgttatggatacacctcctagtgaggtctctagcctccttttttatgacattt 25690565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 97 - 158
Target Start/End: Original strand, 42794629 - 42794690
Alignment:
Q  97 gtgcaattcaaccatacctagcgggagggaaatagaagtgttgattggcttgctaattttag 158  Q
    |||||| |||||||||| | ||| || |||||||||||||  ||||||||||||||||||||    
T  42794629 gtgcaaatcaaccatacttggcgtgaaggaaatagaagtgccgattggcttgctaattttag 42794690  T

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Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 97 - 159
Target Start/End: Original strand, 46428699 - 46428761
Alignment:
Q  97 gtgcaattcaaccatacctagcgggagggaaatagaagtgttgattggcttgctaattttagc 159  Q
    |||||| |||||||||| | ||  || |||||||||||||  |||||||||||||||||||||    
T  46428699 gtgcaaatcaaccatacttggcatgaaggaaatagaagtgccgattggcttgctaattttagc 46428761  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 191 - 260
Target Start/End: Original strand, 1217301 - 1217370
Alignment:
Q  191 tggagactcctcctagtgaggtttcgagtctcctttttgatgatatttccagggcttgtatgcctaggaa 260  Q
    |||||||||||||||||||| ||  ||||||  | ||||||||||||||| ||||||| |||||||||||    
T  1217301 tggagactcctcctagtgagcttcagagtcttttgtttgatgatatttccggggcttgcatgcctaggaa 1217370  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 97 - 165
Target Start/End: Original strand, 4228314 - 4228382
Alignment:
Q  97 gtgcaattcaaccatacctagcgggagggaaatagaagtgttgattggcttgctaattttagcttttct 165  Q
    |||||| |||||||||| | ||| || |||||||||||||  ||||||||||||||||||||| |||||    
T  4228314 gtgcaaatcaaccatacttggcgtgaaggaaatagaagtgccgattggcttgctaattttagcatttct 4228382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 53 - 165
Target Start/End: Original strand, 27389071 - 27389183
Alignment:
Q  53 ccttggtgtgccgtattcaagagcttttaaagttaaactgacaggtgcaattcaaccatacctagcgggagggaaatagaagtgttgattggcttgctaa 152  Q
    |||||||||||||||| |||||||| |||||||| || || ||| |||| ||||| || || |  || || |||||||  ||||||||||||||||  ||    
T  27389071 ccttggtgtgccgtatacaagagctcttaaagttgaattggcagatgcatttcaatcaaacatgacgagaaggaaatatgagtgttgattggcttggcaa 27389170  T
Q  153 ttttagcttttct 165  Q
    | |||| ||||||    
T  27389171 tcttagtttttct 27389183  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 70 - 165
Target Start/End: Original strand, 33927537 - 33927632
Alignment:
Q  70 caagagcttttaaagttaaactgacaggtgcaattcaaccatacctagcgggagggaaatagaagtgttgattggcttgctaattttagcttttct 165  Q
    ||||||||||||||||| || || || ||||| ||| | ||||||| ||||||   ||||||||||| ||||||| |  ||||||||| |||||||    
T  33927537 caagagcttttaaagttgaattggcaagtgcatttcgatcatacctggcgggacaaaaatagaagtgctgattggatgactaattttaccttttct 33927632  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 95 - 149
Target Start/End: Complemental strand, 28561362 - 28561308
Alignment:
Q  95 aggtgcaattcaaccatacctagcgggagggaaatagaagtgttgattggcttgc 149  Q
    |||||||| ||||||||||||| || ||  ||||||||||||||||||| |||||    
T  28561362 aggtgcaaatcaaccatacctaacgcgaatgaaatagaagtgttgattgacttgc 28561308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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