View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5488_high_7 (Length: 264)
Name: NF5488_high_7
Description: NF5488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5488_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 88; Significance: 2e-42; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 18 - 105
Target Start/End: Original strand, 37857880 - 37857967
Alignment:
| Q |
18 |
atcatttattatatattttttaacggctctacgtataattccttagcttatcaatcaaacaccttaaaaaattatacaatggatcttg |
105 |
Q |
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| T |
37857880 |
atcatttattatatattttttaacggctctacgtataattccttagcttatcaatcaaacaccttaaaaaattatacaatggatcttg |
37857967 |
T |
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Target: chr4; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 166 - 250
Target Start/End: Original strand, 37858028 - 37858112
Alignment:
| Q |
166 |
gcaaatctcacgaagaaatatgaatttttactttataatgtagatgttattttatttttaacaatactatcgtagatgctcttct |
250 |
Q |
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| T |
37858028 |
gcaaatctcacgaagaaatatgaatttttactttataatgtagatgttattttatttttaacaatactatcgtagatgctcttct |
37858112 |
T |
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