View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5488_high_9 (Length: 224)
Name: NF5488_high_9
Description: NF5488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5488_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 143; Significance: 3e-75; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 50 - 205
Target Start/End: Original strand, 48408145 - 48408304
Alignment:
| Q |
50 |
atgttcaaaatttgaatcgagaaaattacacctcagatagtatctagctttatacattcttacgtcaagagttacacttctggagaccaaaaccatggtc |
149 |
Q |
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| T |
48408145 |
atgttcaaaatttgaatcgagaaaattacacctcagatagtatctagctttatacattcttacgtcaagagttacacttctggagaccaaaaccatggtc |
48408244 |
T |
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| Q |
150 |
tatccagcctttcaataaaacaa----tagtttcaaatttatgaatataatgcggaccta |
205 |
Q |
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| T |
48408245 |
tatccagcctttcaataaaacaaggagtagtttcaaatttatgaatataatgcggaccta |
48408304 |
T |
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