View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5488_low_6 (Length: 303)

Name: NF5488_low_6
Description: NF5488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5488_low_6
NF5488_low_6
[»] chr4 (7 HSPs)
chr4 (1-303)||(37858270-37858574)
chr4 (100-177)||(42274291-42274368)
chr4 (100-177)||(49081258-49081334)
chr4 (251-303)||(11086338-11086390)
chr4 (100-155)||(1051820-1051875)
chr4 (102-187)||(36619874-36619958)
chr4 (255-303)||(48582241-48582289)
[»] chr3 (7 HSPs)
chr3 (102-177)||(39149167-39149242)
chr3 (102-187)||(34722998-34723082)
chr3 (102-177)||(34664297-34664372)
chr3 (100-187)||(32600682-32600768)
chr3 (100-155)||(37677385-37677440)
chr3 (100-187)||(32497777-32497863)
chr3 (267-299)||(6408363-6408395)
[»] chr2 (9 HSPs)
chr2 (102-187)||(28580371-28580455)
chr2 (67-165)||(32143612-32143710)
chr2 (100-187)||(33051183-33051270)
chr2 (102-177)||(15658834-15658909)
chr2 (101-135)||(34393939-34393973)
chr2 (108-177)||(2128183-2128252)
chr2 (102-175)||(25749704-25749777)
chr2 (267-303)||(168729-168765)
chr2 (267-303)||(38373347-38373383)
[»] chr8 (5 HSPs)
chr8 (68-187)||(8457496-8457614)
chr8 (102-187)||(34127694-34127778)
chr8 (102-187)||(41646466-41646549)
chr8 (100-177)||(30362850-30362927)
chr8 (102-177)||(7662261-7662337)
[»] chr7 (2 HSPs)
chr7 (102-160)||(30198353-30198411)
chr7 (72-169)||(22342310-22342407)
[»] chr6 (2 HSPs)
chr6 (102-156)||(29608484-29608538)
chr6 (102-177)||(19742088-19742163)
[»] chr1 (5 HSPs)
chr1 (100-177)||(6395497-6395574)
chr1 (267-303)||(12188700-12188736)
chr1 (100-152)||(19998568-19998620)
chr1 (105-177)||(43143252-43143324)
chr1 (267-303)||(44018582-44018618)
[»] chr5 (3 HSPs)
chr5 (100-187)||(5091816-5091902)
chr5 (100-177)||(9922905-9922982)
chr5 (102-154)||(41868808-41868860)


Alignment Details
Target: chr4 (Bit Score: 179; Significance: 1e-96; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 303
Target Start/End: Complemental strand, 37858574 - 37858270
Alignment:
Q  1 tgatgaattaacccaacgctttcttnnnnnnntattaaattgggtatactattacttccggagcaccgattaaggaattagaaaataaaatannnnnnn- 99  Q
    |||||||||||||||||||||||||       |||||||||||||||||||  ||||||  || | || ||||||||||||||||| |||||            
T  37858574 tgatgaattaacccaacgctttcttaaaaaaatattaaattgggtatactagcacttccacagtatcggttaaggaattagaaaatgaaatatttttttt 37858475  T
Q  100 gaaaattgtgtattctattttataaaagttgaaatattattcttttcaatgcaaatcatgtattttctttctactttttagtttcttaggggcactggtt 199  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  37858474 ggaaattgtgtattctattttataaaagttgaaatattattcttttcaatgcaaatcatgtattttctttctactttttagtttcttagaggcactggtt 37858375  T
Q  200 aacaaaactcatttttataagataaattttacttaaccaaataattagattaat-ggttaacgatttgattaatagaaactttatcttagaaatacaaat 298  Q
    ||||| || |||||||||||||||| |||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||  |||||||| |    
T  37858374 aacaagacccatttttataagataagttttacttaaccaaataattagattaatgggttaaggatttgattaatagaaactttatcttgaaaatacaagt 37858275  T
Q  299 tttta 303  Q
    |||||    
T  37858274 tttta 37858270  T

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Target: chr4; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 100 - 177
Target Start/End: Complemental strand, 42274368 - 42274291
Alignment:
Q  100 gaaaattgtgtattctattttataaaagttgaaatattattcttttcaatgcaaatcatgtattttctttctactttt 177  Q
    ||||||||||| ||||||||| ||||||||||||||||  |||||| |||| ||||| ||| ||||||||||||||||    
T  42274368 gaaaattgtgtgttctattttttaaaagttgaaatatttctctttttaatgtaaatcttgtcttttctttctactttt 42274291  T

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Target: chr4; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 100 - 177
Target Start/End: Complemental strand, 49081334 - 49081258
Alignment:
Q  100 gaaaattgtgtattctattttataaaagttgaaatattattcttttcaatgcaaatcatgtattttctttctactttt 177  Q
    ||||||||||||||||||||| |||||||| |||||||  ||||||||||| ||||||||  ||||||||||||||||    
T  49081334 gaaaattgtgtattctattttttaaaagttaaaatattgctcttttcaatgtaaatcatg-cttttctttctactttt 49081258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 251 - 303
Target Start/End: Complemental strand, 11086390 - 11086338
Alignment:
Q  251 aatggttaacgatttgattaatagaaactttatcttagaaatacaaattttta 303  Q
    ||||||||| ||||| |||||||| ||||||||||| ||||||||||| ||||    
T  11086390 aatggttaaggatttcattaataggaactttatcttggaaatacaaatcttta 11086338  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 100 - 155
Target Start/End: Original strand, 1051820 - 1051875
Alignment:
Q  100 gaaaattgtgtattctattttataaaagttgaaatattattcttttcaatgcaaat 155  Q
    |||||||||||||||||| || |||||||| ||| |||  ||||||||||||||||    
T  1051820 gaaaattgtgtattctatgttttaaaagttaaaaaattgctcttttcaatgcaaat 1051875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 187
Target Start/End: Complemental strand, 36619958 - 36619874
Alignment:
Q  102 aaattgtgtattctattttataaaagttgaaatattattcttttcaatgcaaatcatgtattttctttctactttttagtttctta 187  Q
    |||||||||||| || ||| |||||||| ||||| | |||||||||||| |||   ||  ||||||||||| ||||||||||||||    
T  36619958 aaattgtgtattttactttttaaaagtttaaatagtgttcttttcaatgtaaaatttgacttttctttcta-tttttagtttctta 36619874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 255 - 303
Target Start/End: Complemental strand, 48582289 - 48582241
Alignment:
Q  255 gttaacgatttgattaatagaaactttatcttagaaatacaaattttta 303  Q
    ||||| ||||| ||||||||||||||||||||  |||||||||| ||||    
T  48582289 gttaaggatttcattaatagaaactttatcttgaaaatacaaatcttta 48582241  T

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Target: chr3 (Bit Score: 56; Significance: 3e-23; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 102 - 177
Target Start/End: Original strand, 39149167 - 39149242
Alignment:
Q  102 aaattgtgtattctattttataaaagttgaaatattattcttttcaatgcaaatcatgtattttctttctactttt 177  Q
    ||||||||||||||||||| |||||||||||||||| || ||||||||||||||||| | ||||||||||||||||    
T  39149167 aaattgtgtattctattttttaaaagttgaaatattgttattttcaatgcaaatcatatcttttctttctactttt 39149242  T

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Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 102 - 187
Target Start/End: Complemental strand, 34723082 - 34722998
Alignment:
Q  102 aaattgtgtattctattttataaaagttgaaatattattcttttcaatgcaaatcatgtattttctttctactttttagtttctta 187  Q
    ||||||||||||||||||| ||||||||||| ||||| |||||| |||||||||||||| ||||||||  || |||||||||||||    
T  34723082 aaattgtgtattctattttttaaaagttgaactattactctttttaatgcaaatcatgtcttttcttttcac-ttttagtttctta 34722998  T

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Target: chr3; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 102 - 177
Target Start/End: Original strand, 34664297 - 34664372
Alignment:
Q  102 aaattgtgtattctattttataaaagttgaaatattattcttttcaatgcaaatcatgtattttctttctactttt 177  Q
    ||||| ||||||||||||| |||||||||||| || | ||||||||||||||| |||||||||||||| |||||||    
T  34664297 aaattatgtattctattttttaaaagttgaaaaatgactcttttcaatgcaaaacatgtattttctttttactttt 34664372  T

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Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 100 - 187
Target Start/End: Original strand, 32600682 - 32600768
Alignment:
Q  100 gaaaattgtgtattctattttataaaagttgaaatattattcttttcaatgcaaatcatgtattttctttctactttttagtttctta 187  Q
    |||||||||||||||||| || ||||||||||| ||||  |||||||||| |||||||| | ||||| ||| || |||||||||||||    
T  32600682 gaaaattgtgtattctatattttaaaagttgaattattgctcttttcaatacaaatcatttcttttcattccac-ttttagtttctta 32600768  T

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Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 100 - 155
Target Start/End: Original strand, 37677385 - 37677440
Alignment:
Q  100 gaaaattgtgtattctattttataaaagttgaaatattattcttttcaatgcaaat 155  Q
    ||||||||||||||||||||| ||||||||||||||||  |||| |||||| ||||    
T  37677385 gaaaattgtgtattctattttttaaaagttgaaatattgctcttgtcaatgtaaat 37677440  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 100 - 187
Target Start/End: Complemental strand, 32497863 - 32497777
Alignment:
Q  100 gaaaattgtgtattctattttataaaagttgaaatattattcttttcaatgcaaatcatgtattttctttctactttttagtttctta 187  Q
    |||||||||||||| || ||| | |||||| ||| | | || ||||||||||||||  ||||||||||||| | ||||||||||||||    
T  32497863 gaaaattgtgtattatactttttgaaagtttaaaaaatgttattttcaatgcaaattttgtattttctttcca-tttttagtttctta 32497777  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 267 - 299
Target Start/End: Original strand, 6408363 - 6408395
Alignment:
Q  267 attaatagaaactttatcttagaaatacaaatt 299  Q
    ||||| |||||||||||||||||||||||||||    
T  6408363 attaaaagaaactttatcttagaaatacaaatt 6408395  T

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Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 102 - 187
Target Start/End: Complemental strand, 28580455 - 28580371
Alignment:
Q  102 aaattgtgtattctattttataaaagttgaaatattattcttttcaatgcaaatcatgtattttctttctactttttagtttctta 187  Q
    |||||||||||| |||||| |||||||||||| |||| |||||||||| ||||| |||||||||||||||||  ||||||||||||    
T  28580455 aaattgtgtattttattttttaaaagttgaaaaattactcttttcaatacaaattatgtattttctttctac-ctttagtttctta 28580371  T

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Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 67 - 165
Target Start/End: Original strand, 32143612 - 32143710
Alignment:
Q  67 cgattaaggaattagaaaataaaatannnnnnngaaaattgtgtattctattttataaaagttgaaatattattcttttcaatgcaaatcatgtatttt 165  Q
    ||||||| ||||||||||| ||||||       ||||||||||||||||||||| |||||||||||||||| || ||||||||| ||||||||| ||||    
T  32143612 cgattaaagaattagaaaagaaaatattttcttgaaaattgtgtattctattttttaaaagttgaaatattgttattttcaatgtaaatcatgtttttt 32143710  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 100 - 187
Target Start/End: Complemental strand, 33051270 - 33051183
Alignment:
Q  100 gaaaattgtgtattctattttataa-aagttgaaatattattcttttcaatgcaaatcatgtattttctttctactttttagtttctta 187  Q
    ||||||||||||||||||||| |   ||||||||||||| ||||||||||| |||||||| | |||||||| | | |||||||||||||    
T  33051270 gaaaattgtgtattctatttttttttaagttgaaatattgttcttttcaatacaaatcatatcttttcttt-tccattttagtttctta 33051183  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 102 - 177
Target Start/End: Original strand, 15658834 - 15658909
Alignment:
Q  102 aaattgtgtattctattttataaaagttgaaatattattcttttcaatgcaaatcatgtattttctttctactttt 177  Q
    |||||||||||||||| || |||||||| |||  ||  |||||| ||||||||| || | ||||||||||||||||    
T  15658834 aaattgtgtattctatgttttaaaagttaaaaagttgctcttttgaatgcaaattatattttttctttctactttt 15658909  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 101 - 135
Target Start/End: Complemental strand, 34393973 - 34393939
Alignment:
Q  101 aaaattgtgtattctattttataaaagttgaaata 135  Q
    |||||||||||||||||||| ||||||||||||||    
T  34393973 aaaattgtgtattctattttttaaaagttgaaata 34393939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 177
Target Start/End: Complemental strand, 2128252 - 2128183
Alignment:
Q  108 tgtattctattttataaaagttgaaatattattcttttcaatgcaaatcatgtattttctttctactttt 177  Q
    |||||||| |||| ||||||||||||||||  |  |||||||| ||||||||| || | |||||||||||    
T  2128252 tgtattctcttttttaaaagttgaaatattgctggtttcaatgtaaatcatgtgttctatttctactttt 2128183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 175
Target Start/End: Original strand, 25749704 - 25749777
Alignment:
Q  102 aaattgtgtattctattttataaaagttgaaatattattcttttcaatgcaaatcatgtattttctttctactt 175  Q
    ||||||||||||||||||| | |||||| ||| | | |||||||||||||||| | |   ||||||||||||||    
T  25749704 aaattgtgtattctattttttgaaagttaaaaaagtgttcttttcaatgcaaaactttacttttctttctactt 25749777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 267 - 303
Target Start/End: Complemental strand, 168765 - 168729
Alignment:
Q  267 attaatagaaactttatcttagaaatacaaattttta 303  Q
    ||||||||||| |||||||||||||||||||| ||||    
T  168765 attaatagaaattttatcttagaaatacaaatcttta 168729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 267 - 303
Target Start/End: Original strand, 38373347 - 38373383
Alignment:
Q  267 attaatagaaactttatcttagaaatacaaattttta 303  Q
    |||||||||||||||||||| ||||||||| ||||||    
T  38373347 attaatagaaactttatcttggaaatacaagttttta 38373383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 7e-18; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 68 - 187
Target Start/End: Complemental strand, 8457614 - 8457496
Alignment:
Q  68 gattaaggaattagaaaataaaatannnnnnngaaaattgtgtattctattttataaaagttgaaatattattcttttcaatgcaaatcatgtattttct 167  Q
    ||||||||||||||||||  |||||       | ||||||||||||||||||| ||||||||||||| ||  ||||||||||| ||||||||| |||| |    
T  8457614 gattaaggaattagaaaaggaaatattttcttggaaattgtgtattctattttttaaaagttgaaatgttgctcttttcaatgtaaatcatgtcttttat 8457515  T
Q  168 ttctactttttagtttctta 187  Q
    |||||| | |||||||||||    
T  8457514 ttctac-tattagtttctta 8457496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 102 - 187
Target Start/End: Original strand, 34127694 - 34127778
Alignment:
Q  102 aaattgtgtattctattttataaaagttgaaatattattcttttcaatgcaaatcatgtattttctttctactttttagtttctta 187  Q
    ||||||||||||||||||| |||||||| |||||||  ||||||||||| ||||||||  ||||||||| || |||||||||||||    
T  34127694 aaattgtgtattctattttttaaaagttaaaatattgctcttttcaatgtaaatcatgccttttctttccac-ttttagtttctta 34127778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 102 - 187
Target Start/End: Original strand, 41646466 - 41646549
Alignment:
Q  102 aaattgtgtattctattttataaaagttgaaatattattcttttcaatgcaaatcatgtattttctttctactttttagtttctta 187  Q
    ||||||||||||||||||| |||||||| |||||||| | ||||||||||||||||| | |||| |||| || |||||||||||||    
T  41646466 aaattgtgtattctattttttaaaagttaaaatattact-ttttcaatgcaaatcatatcttttatttccac-ttttagtttctta 41646549  T

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Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 100 - 177
Target Start/End: Original strand, 30362850 - 30362927
Alignment:
Q  100 gaaaattgtgtattctattttataaaagttgaaatattattcttttcaatgcaaatcatgtattttctttctactttt 177  Q
    |||||||||||||| ||||||  |||||||||||||||  ||||||||||  |||||| || |||| |||||||||||    
T  30362850 gaaaattgtgtattttatttttaaaaagttgaaatattgctcttttcaatataaatcacgtcttttatttctactttt 30362927  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 102 - 177
Target Start/End: Complemental strand, 7662337 - 7662261
Alignment:
Q  102 aaattgtgtattctattttataaaagttgaaatattattcttttcaatgcaaatcat-gtattttctttctactttt 177  Q
    |||||||||||||||| || ||||||||  || ||| || |||||||||||||| ||  | ||||||||||||||||    
T  7662337 aaattgtgtattctatattttaaaagttagaaaattgtttttttcaatgcaaattatatttttttctttctactttt 7662261  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 102 - 160
Target Start/End: Original strand, 30198353 - 30198411
Alignment:
Q  102 aaattgtgtattctattttataaaagttgaaatattattcttttcaatgcaaatcatgt 160  Q
    ||||||||||||||||||| |||||||||||||||| |  |||||||||| ||||||||    
T  30198353 aaattgtgtattctattttttaaaagttgaaatattgtcattttcaatgcgaatcatgt 30198411  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 72 - 169
Target Start/End: Original strand, 22342310 - 22342407
Alignment:
Q  72 aaggaattagaaaataaaatannnnnnngaaaattgtgtattctattttataaaagttgaaatattattcttttcaatgcaaatcatgtattttcttt 169  Q
    |||||||||||||| ||||||       ||||||||| |||||||| || |||||||||||||| | || ||||||||| ||||||| | ||||||||    
T  22342310 aaggaattagaaaagaaaatattttcatgaaaattgtctattctatgttttaaaagttgaaatagtgttattttcaatgtaaatcatatcttttcttt 22342407  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 102 - 156
Target Start/End: Original strand, 29608484 - 29608538
Alignment:
Q  102 aaattgtgtattctattttataaaagttgaaatattattcttttcaatgcaaatc 156  Q
    ||||| ||||||||||||| |||||||| ||||||| |||||||||||| |||||    
T  29608484 aaattatgtattctattttttaaaagttaaaatattgttcttttcaatgtaaatc 29608538  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 102 - 177
Target Start/End: Complemental strand, 19742163 - 19742088
Alignment:
Q  102 aaattgtgtattctattttataaaagttgaaatattattcttttcaatgcaaatcatgtattttctttctactttt 177  Q
    |||||| ||||||||| || ||||  ||||||||||  ||||||||||| ||||||||  |||| |||||||||||    
T  19742163 aaattgagtattctatcttttaaagtttgaaatattgctcttttcaatgtaaatcatgccttttatttctactttt 19742088  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 100 - 177
Target Start/End: Original strand, 6395497 - 6395574
Alignment:
Q  100 gaaaattgtgtattctattttataaaagttgaaatattattcttttcaatgcaaatcatgtattttctttctactttt 177  Q
    |||||||||||||| ||| || |||||||| |||  || ||||||||||||||||| || | |||||||| |||||||    
T  6395497 gaaaattgtgtattttatgttttaaaagttaaaaagttgttcttttcaatgcaaattatattttttctttttactttt 6395574  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 267 - 303
Target Start/End: Complemental strand, 12188736 - 12188700
Alignment:
Q  267 attaatagaaactttatcttagaaatacaaattttta 303  Q
    ||||||||||||||| |||| ||||||||||||||||    
T  12188736 attaatagaaactttgtcttggaaatacaaattttta 12188700  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 100 - 152
Target Start/End: Complemental strand, 19998620 - 19998568
Alignment:
Q  100 gaaaattgtgtattctattttataaaagttgaaatattattcttttcaatgca 152  Q
    |||||||||||||||||| || |||||||| ||| ||| | ||||||||||||    
T  19998620 gaaaattgtgtattctatattttaaaagttaaaaaattgtacttttcaatgca 19998568  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 105 - 177
Target Start/End: Original strand, 43143252 - 43143324
Alignment:
Q  105 ttgtgtattctattttataaaagttgaaatattattcttttcaatgcaaatcatgtattttctttctactttt 177  Q
    ||||||||| || ||| | |||||||||| | | || ||||||||  ||||| ||||||||||||||||||||    
T  43143252 ttgtgtattatactttttgaaagttgaaaaaatgttattttcaatataaatcttgtattttctttctactttt 43143324  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 267 - 303
Target Start/End: Original strand, 44018582 - 44018618
Alignment:
Q  267 attaatagaaactttatcttagaaatacaaattttta 303  Q
    ||||||||||||||||||||| ||||| |||||||||    
T  44018582 attaatagaaactttatcttaaaaatataaattttta 44018618  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 100 - 187
Target Start/End: Original strand, 5091816 - 5091902
Alignment:
Q  100 gaaaattgtgtattctattttataaaagttgaaatattattcttttcaatgcaaatcatgtattttctttctactttttagtttctta 187  Q
    |||||||||||||| || ||| | |||||||||| | |  |||||||||  |||||| ||| |||||||||||| |||||||||||||    
T  5091816 gaaaattgtgtattatactttttgaaagttgaaaaagtgctcttttcaaaacaaatcttgtcttttctttctac-ttttagtttctta 5091902  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 100 - 177
Target Start/End: Complemental strand, 9922982 - 9922905
Alignment:
Q  100 gaaaattgtgtattctattttataaaagttgaaatattattcttttcaatgcaaatcatgtattttctttctactttt 177  Q
    |||||||||||||| ||| || |||||||| |||  ||  |||||||||| ||||| || | ||||||||||||||||    
T  9922982 gaaaattgtgtattatatgttttaaaagttaaaaagttgctcttttcaattcaaattatattttttctttctactttt 9922905  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 102 - 154
Target Start/End: Complemental strand, 41868860 - 41868808
Alignment:
Q  102 aaattgtgtattctattttataaaagttgaaatattattcttttcaatgcaaa 154  Q
    |||||||||||| || ||| |||||||||||  ||||||||||| ||||||||    
T  41868860 aaattgtgtattttactttttaaaagttgaagaattattctttttaatgcaaa 41868808  T

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