View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5488_low_8 (Length: 225)

Name: NF5488_low_8
Description: NF5488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5488_low_8
NF5488_low_8
[»] chr6 (5 HSPs)
chr6 (20-213)||(12261071-12261263)
chr6 (18-213)||(20746201-20746396)
chr6 (18-213)||(16146364-16146555)
chr6 (18-213)||(27129128-27129320)
chr6 (115-213)||(901694-901792)
[»] chr7 (5 HSPs)
chr7 (18-213)||(17278685-17278878)
chr7 (33-213)||(8685004-8685179)
chr7 (18-155)||(30765989-30766123)
chr7 (118-213)||(17236336-17236431)
chr7 (171-213)||(30765953-30765995)
[»] chr3 (6 HSPs)
chr3 (17-213)||(17514306-17514500)
chr3 (33-213)||(32304865-32305043)
chr3 (33-213)||(42540795-42540973)
chr3 (18-213)||(34817615-34817809)
chr3 (115-213)||(52254551-52254649)
chr3 (115-209)||(33389463-33389556)
[»] chr8 (3 HSPs)
chr8 (18-213)||(13462391-13462584)
chr8 (159-218)||(9319070-9319129)
chr8 (33-90)||(9318988-9319044)
[»] chr5 (3 HSPs)
chr5 (18-213)||(6794363-6794554)
chr5 (17-213)||(23082825-23083018)
chr5 (107-213)||(22165849-22165955)
[»] chr2 (6 HSPs)
chr2 (18-213)||(28189732-28189925)
chr2 (18-213)||(8029588-8029781)
chr2 (18-213)||(19298149-19298342)
chr2 (18-213)||(40468670-40468867)
chr2 (18-213)||(20685916-20686107)
chr2 (115-213)||(3093424-3093522)
[»] scaffold0202 (1 HSPs)
scaffold0202 (18-213)||(21786-21980)
[»] chr1 (5 HSPs)
chr1 (18-213)||(47112378-47112571)
chr1 (22-213)||(36142399-36142588)
chr1 (18-218)||(49652662-49652858)
chr1 (115-211)||(24508484-24508580)
chr1 (115-213)||(52750438-52750537)
[»] chr4 (5 HSPs)
chr4 (18-213)||(9086915-9087109)
chr4 (20-218)||(40680730-40680929)
chr4 (115-213)||(13631104-13631202)
chr4 (115-213)||(50281952-50282050)
chr4 (149-213)||(44182835-44182898)


Alignment Details
Target: chr6 (Bit Score: 116; Significance: 4e-59; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 20 - 213
Target Start/End: Original strand, 12261071 - 12261263
Alignment:
Q  20 tttcaactgctgattgtagttgttgtggatgttttgaagattttagttgatttttcccattgttattgaatctgaagnnnnnnnnnnttagaaaatagat 119  Q
    |||||||||||  ||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| |           |||| ||||||||    
T  12261071 tttcaactgctagttgtagttgttgtggatgttttgaagattttggttgatttt-cccattgttattgaatctggaaaaaaaataaattaggaaatagat 12261169  T
Q  120 atgaagattttggttgatttgctttaggaagattgagaaattgtgttgtttagattgaaagagatgtttataagtggaaaaattggttattgat 213  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | || |||||||||||||||||    
T  12261170 atgaagattttggttgatttgctttagggagattgagaaattgtgttgtttagattgaaagagatgtttatgaatgaaaaaattggttattgat 12261263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 18 - 213
Target Start/End: Original strand, 20746201 - 20746396
Alignment:
Q  18 tttttcaactgctgattgtagttgttgtggatgttttgaagattttagttgatttttcccattgttattgaatctgaagnnnnnnnnnnttagaaaatag 117  Q
    |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |           |||| |||||     
T  20746201 tttttcaactgctagttgtagttgttgtggatgttttgaagattttagttgatttttcc-attgttattgaatctggaaaaaaaataaattaggaaatac 20746299  T
Q  118 atatgaagattttggttgatttgctttaggaagattgagaaattgtgttgtttagattgaaagagatgtttataagtg-gaaaaattggttattgat 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||  |||||||||||||||||    
T  20746300 atatgaagattttggttgatttgctttaggaagattgagaaattgtgttgtttagattgaaagagatgtttatgaatgaaaaaaattggttattgat 20746396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 18 - 213
Target Start/End: Complemental strand, 16146555 - 16146364
Alignment:
Q  18 tttttcaactgctgattgtagttgttgtggatgttttgaagattttagttgatttttcccattgttattgaatct-gaagnnnnnnnnnnttagaaaata 116  Q
    ||||||||||| |  ||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| |||           |||| |||||    
T  16146555 tttttcaactgttagttgtagttgttgtggatgttttgaagattttggttgatttt-cccattgttattgaatctcgaa----aaaaaaattaggaaata 16146461  T
Q  117 gatatgaagattttggttgatttgctttaggaagattgagaaattgtgttgtttagattgaaagagatgtttataagtggaaaaattggttattgat 213  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | || |||||||||||||||||    
T  16146460 gatatgaagattttggttgatttgctttagggagattgagaaattgtgttgtttagattgaaagagatgtttatgaatgaaaaaattggttattgat 16146364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 18 - 213
Target Start/End: Complemental strand, 27129320 - 27129128
Alignment:
Q  18 tttttcaactgctgattgtagttgttgtggatgttttgaagattttagttgatttttcccattgttattgaatctgaagnnnnnnnnnnttagaaaatag 117  Q
    |||||||||||||  ||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||  ||             ||||||||    
T  27129320 tttttcaactgctagttgtagttgttgtggatgttttgaagattttggttgatttt-cccattgttattgaatct--aggaaaaaaaaaaaggaaaatag 27129224  T
Q  118 atatgaagattttggttgatttgctttaggaagattgagaaattgtgttgtttagattgaaagagatgtttataagtggaaaaattggttattgat 213  Q
    |||||||||||||||||||||||||||||| ||||||| |||||||| ||||||||||||||||||||||||| | || |||||||||||||||||    
T  27129223 atatgaagattttggttgatttgctttagggagattgaaaaattgtgatgtttagattgaaagagatgtttatgaatgaaaaaattggttattgat 27129128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 115 - 213
Target Start/End: Complemental strand, 901792 - 901694
Alignment:
Q  115 tagatatgaagattttggttgatttgctttaggaagattgagaaattgtgttgtttagattgaaagagatgtttataagtggaaaaattggttattgat 213  Q
    |||||||||||||||||||||||||| |||||  ||||||| |||||||||||||||||||||||| ||||||| | | ||||||||||||||||||||    
T  901792 tagatatgaagattttggttgatttggtttagagagattgataaattgtgttgtttagattgaaagggatgttttttaatggaaaaattggttattgat 901694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 114; Significance: 6e-58; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 18 - 213
Target Start/End: Complemental strand, 17278878 - 17278685
Alignment:
Q  18 tttttcaactgctgattgtagttgttgtggatgttttgaagattttagttgatttttcccattgttattgaatctgaagnnnnnnnnnnttagaaaatag 117  Q
    |||||||||||||  ||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| |           |||| ||||||    
T  17278878 tttttcaactgctagttgtagttgttgtggatgttttgaagattttggttgatttt-cccattgttattgaatctgga-aaaaaaaaaattaggaaatag 17278781  T
Q  118 atatgaagattttggttgatttgctttaggaagattgagaaattgtgttgtttagattgaaagagatgtttataagtggaaaaattggttattgat 213  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | || |||||||||||||||||    
T  17278780 atatgaagattttggttgatttgctttagggagattgagaaattgtgttgtttagattgaaagagatgtttatgaatgaaaaaattggttattgat 17278685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 33 - 213
Target Start/End: Complemental strand, 8685179 - 8685004
Alignment:
Q  33 ttgtagttgttgtggatgttttgaagattttagttgatttttcccattgttattgaatctgaagnnnnnnnnnnttagaaaatagatatgaagattttgg 132  Q
    |||| ||||||||||||||||||| |||||| |||||||||||| ||||||||| ||||| |||            || ||||| |||||||||||||||    
T  8685179 ttgttgttgttgtggatgttttgatgattttggttgatttttcc-attgttattaaatctaaagaaaaaaaa----aggaaatatatatgaagattttgg 8685085  T
Q  133 ttgatttgctttaggaagattgagaaattgtgttgtttagattgaaagagatgtttataagtggaaaaattggttattgat 213  Q
    |||||||| |||||| |||||||||||||||||||||||||||||||  ||||||| | | |||||||||||||| |||||    
T  8685084 ttgatttggtttagggagattgagaaattgtgttgtttagattgaaatggatgtttttgaatggaaaaattggttgttgat 8685004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 18 - 155
Target Start/End: Complemental strand, 30766123 - 30765989
Alignment:
Q  18 tttttcaactgctgattgtagttgttgtggatgttttgaagattttagttgatttttcccattgttattgaatctgaagnnnnnnnnnnttagaaaatag 117  Q
    |||||||||||||  ||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||  |          |||| ||||||    
T  30766123 tttttcaactgctagttgtagttgttgtggatgttttgaagattttggttga-ttttcccattgttattgaatctg--gaaaaaaaaaattaggaaatag 30766027  T
Q  118 atatgaagattttggttgatttgctttaggaagattga 155  Q
    |||||||||||||||||||||||||||||| |||||||    
T  30766026 atatgaagattttggttgatttgctttagggagattga 30765989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 118 - 213
Target Start/End: Complemental strand, 17236431 - 17236336
Alignment:
Q  118 atatgaagattttggttgatttgctttaggaagattgagaaattgtgttgtttagattgaaagagatgtttataagtggaaaaattggttattgat 213  Q
    ||||||||||||||||||||||| | |||| ||||||||||||||| |||||||||||||||| ||||||| | | ||||||||||||||||||||    
T  17236431 atatgaagattttggttgatttggtctagggagattgagaaattgtattgtttagattgaaagggatgttttttaatggaaaaattggttattgat 17236336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 213
Target Start/End: Complemental strand, 30765995 - 30765953
Alignment:
Q  171 agattgaaagagatgtttataagtggaaaaattggttattgat 213  Q
    |||||||||||||||||||| | || |||||||||||||||||    
T  30765995 agattgaaagagatgtttatgaatgaaaaaattggttattgat 30765953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 111; Significance: 3e-56; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 17 - 213
Target Start/End: Original strand, 17514306 - 17514500
Alignment:
Q  17 atttttcaactgctgattgtagttgttgtggatgttttgaagattttagttgatttttcccattgttattgaatctgaagnnnnnnnnnnttagaaaata 116  Q
    |||||||||||| |  ||||||||||||| ||||||||||||||||| ||||||||| ||||||||||||||||||| |           |||| |||||    
T  17514306 atttttcaactgttagttgtagttgttgttgatgttttgaagattttggttgatttt-cccattgttattgaatctgga-aaaaaataaattaggaaata 17514403  T
Q  117 gatatgaagattttggttgatttgctttaggaagattgagaaattgtgttgtttagattgaaagagatgtttataagtggaaaaattggttattgat 213  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||    
T  17514404 gatatgaagattttggttgatttgctttagggagattgagaaattgtgttgtttagattgaaagagatgtttatgaatggaaaaattggttattgat 17514500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 33 - 213
Target Start/End: Original strand, 32304865 - 32305043
Alignment:
Q  33 ttgtagttgttgtggatgttttgaagattttagttgatttttcccattgttattgaatctgaagnnnnnnnnnnttagaaaatagatatgaagattttgg 132  Q
    ||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| |           |||| |||||||||||||||||||||    
T  32304865 ttgtagttgttgtggatgttttgaagattttggttgatttt-cccattgttattgaatctgga-aaaaaataaattaggaaatagatatgaagattttgg 32304962  T
Q  133 ttgatttgctttaggaagattgagaaattgtgttgtttagattgaaagagatgtttataagtggaaaaattggttattgat 213  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | || |||||||||||||||||    
T  32304963 ttgatttgctttagggagattgagaaattgtgttgtttagattgaaagagatgtttatgaatgaaaaaattggttattgat 32305043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 33 - 213
Target Start/End: Original strand, 42540795 - 42540973
Alignment:
Q  33 ttgtagttgttgtggatgttttgaagattttagttgatttttcccattgttattgaatctgaagnnnnnnnnnnttagaaaatagatatgaagattttgg 132  Q
    ||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| || |           |||| |||||||||||||||||||||    
T  42540795 ttgtagttgttgtggatgttttgaagattttggttgatttt-cccattgttattgaatttgga-aaaaaataaattaggaaatagatatgaagattttgg 42540892  T
Q  133 ttgatttgctttaggaagattgagaaattgtgttgtttagattgaaagagatgtttataagtggaaaaattggttattgat 213  Q
    ||||||||||||||| ||||||||||||||| ||||||||||||||||| |||||||| | || |||||||||||||||||    
T  42540893 ttgatttgctttagggagattgagaaattgtattgtttagattgaaagaaatgtttatgaatgaaaaaattggttattgat 42540973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 18 - 213
Target Start/End: Complemental strand, 34817809 - 34817615
Alignment:
Q  18 tttttcaactgctgattgtagttgttgtggatgttttgaagattttagttgatttttcccattgttattgaatctgaagnnnnnnnnnnttagaaaatag 117  Q
    |||||||| ||||  ||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| |            ||| ||||||    
T  34817809 tttttcaattgctagttgtagttgttgtggatgttttgaagattttggttgatttt-cccattgttattgaatctggaaaataaataaaataggaaatag 34817711  T
Q  118 atatgaagattttggttgatttgctttaggaagattgagaaattgtgttgtttagattgaaagagatgtttataagtggaaaaattggttattgat 213  Q
    ||| |||| ||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| || | || |||||||||||||||||    
T  34817710 atacgaaggttttggttgatttgctttagggagattgagaaattgtgttgtttagattggaagagatgttcatgaatgaaaaaattggttattgat 34817615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 115 - 213
Target Start/End: Complemental strand, 52254649 - 52254551
Alignment:
Q  115 tagatatgaagattttggttgatttgctttaggaagattgagaaattgtgttgtttagattgaaagagatgtttataagtggaaaaattggttattgat 213  Q
    |||||||||||||||||||||||||| | |||| ||||||||||||||| |||||||||||||||| ||||||| | | ||||| ||||||||||||||    
T  52254649 tagatatgaagattttggttgatttggtctagggagattgagaaattgtattgtttagattgaaagggatgttttttaatggaacaattggttattgat 52254551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 115 - 209
Target Start/End: Complemental strand, 33389556 - 33389463
Alignment:
Q  115 tagatatgaagattttggttgatttgctttaggaagattgagaaattgtgttgtttagattgaaagagatgtttataagtggaaaaattggttat 209  Q
    ||||||| |||||||||||||||||| |||||| ||||||| |||||||||||||| ||||||||| ||||||| ||| |||||||||| |||||    
T  33389556 tagatataaagattttggttgatttggtttagggagattgaaaaattgtgttgttttgattgaaagggatgtttttaa-tggaaaaattagttat 33389463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 110; Significance: 1e-55; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 18 - 213
Target Start/End: Complemental strand, 13462584 - 13462391
Alignment:
Q  18 tttttcaactgctgattgtagttgttgtggatgttttgaagattttagttgatttttcccattgttattgaatctgaagnnnnnnnnnnttagaaaatag 117  Q
    |||||||||||||  ||||||| ||||||||||||||||||||||| ||||||||| ||||||||||||||||||| |           |||| ||||||    
T  13462584 tttttcaactgctagttgtagtagttgtggatgttttgaagattttggttgatttt-cccattgttattgaatctgga-aaaaaataaattaggaaatag 13462487  T
Q  118 atatgaagattttggttgatttgctttaggaagattgagaaattgtgttgtttagattgaaagagatgtttataagtggaaaaattggttattgat 213  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | || |||||||||||||||||    
T  13462486 atatgaagattttggttgatttgctttagggagattgagaaattgtgttgtttagattgaaagagatgtttatgaatgaaaaaattggttattgat 13462391  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 159 - 218
Target Start/End: Original strand, 9319070 - 9319129
Alignment:
Q  159 attgtgttgtttagattgaaagagatgtttataagtggaaaaattggttattgatgatgt 218  Q
    |||||||||||||||||||||| ||||||| | | || ||||||||||||||||| ||||    
T  9319070 attgtgttgtttagattgaaagggatgtttttgaatgaaaaaattggttattgattatgt 9319129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 33 - 90
Target Start/End: Original strand, 9318988 - 9319044
Alignment:
Q  33 ttgtagttgttgtggatgttttgaagattttagttgatttttcccattgttattgaat 90  Q
    |||| ||||||||||||| |||||||||| | |||||||||| |||||||||||||||    
T  9318988 ttgttgttgttgtggatgctttgaagattctggttgattttt-ccattgttattgaat 9319044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 110; Significance: 1e-55; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 18 - 213
Target Start/End: Original strand, 6794363 - 6794554
Alignment:
Q  18 tttttcaactgctgattgtagttgttgtggatgttttgaagattttagttgatttttcccattgttattgaatctgaagnnnnnnnnnnttagaaaatag 117  Q
    |||||||||||||  ||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| |           |||| ||||||    
T  6794363 tttttcaactgctagttgtagttgttgtggatgttttgaagattttggttgatttt-cccattgttattgaatctgga---aaaaaaaattaggaaatag 6794458  T
Q  118 atatgaagattttggttgatttgctttaggaagattgagaaattgtgttgtttagattgaaagagatgtttataagtggaaaaattggttattgat 213  Q
    ||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||| | || |||||||||||||||||    
T  6794459 atatgaagattttggttgatttgttttagggagattgagaaattgtgttgtttagattgaaagagatgtttatgaatgaaaaaattggttattgat 6794554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 17 - 213
Target Start/End: Complemental strand, 23083018 - 23082825
Alignment:
Q  17 atttttcaactgctgattgtagttgttgtggatgttttgaagattttagttgatttttcccattgttattgaatctgaagnnnnnnnnnnttagaaaata 116  Q
    ||||||||||| ||  ||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| |           |||| |||||    
T  23083018 atttttcaactactagttgtagttgttgtggatgttttgaagattttggttgatttt-cccattgttattgaatctgga-aaaaaataaattaggaaata 23082921  T
Q  117 gatatgaagattttggttgatttgctttaggaagattgagaaattgtgttgtttagattgaaagagatgtttataagtggaaaaattggttattgat 213  Q
    ||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| | || |||||||||||||||||    
T  23082920 gatatgaagattttggttgatttgctttagggag-ttgagaaattgtgttgtttagattgaaagagatgtttatgaatgaaaaaattggttattgat 23082825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 107 - 213
Target Start/End: Original strand, 22165849 - 22165955
Alignment:
Q  107 ttagaaaatagatatgaagattttggttgatttgctttaggaagattgagaaattgtgttgtttagattgaaagagatg-tttataagtggaaaaattgg 205  Q
    |||| ||||||||||||||||||||||||||||| |||| | |||||||||| |||||||||||  | |||||| |||| ||| | ||||| ||||||||    
T  22165849 ttaggaaatagatatgaagattttggttgatttgatttatggagattgagaatttgtgttgtttgaaatgaaagtgatgtttttttagtgg-aaaattgg 22165947  T
Q  206 ttattgat 213  Q
    ||||||||    
T  22165948 ttattgat 22165955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 110; Significance: 1e-55; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 18 - 213
Target Start/End: Complemental strand, 28189925 - 28189732
Alignment:
Q  18 tttttcaactgctgattgtagttgttgtggatgttttgaagattttagttgatttttcccattgttattgaatctgaagnnnnnnnnnnttagaaaatag 117  Q
    |||||||||||||  ||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| |           |||| ||||||    
T  28189925 tttttcaactgctagttgtagttgttgtggatgttttgaagatttttgttgatttt-cccattgttattgaatctgga-aaaaaaaaaattaggaaatag 28189828  T
Q  118 atatgaagattttggttgatttgctttaggaagattgagaaattgtgttgtttagattgaaagagatgtttataagtggaaaaattggttattgat 213  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | || |||||||| ||||||||    
T  28189827 atatgaagattttggttgatttgctttagggagattgagaaattgtgttgtttagattgaaagagatgtttatgaatgaaaaaattgattattgat 28189732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 18 - 213
Target Start/End: Original strand, 8029588 - 8029781
Alignment:
Q  18 tttttcaactgctgattgtagttgttgtggatgttttgaagattttagttgatttttcccattgttattgaatctgaagnnnnnnnnnnttagaaaatag 117  Q
    |||||||||||||  ||||||||||||||||||||||||||||||| |||||||||||  ||||||||||||||||||           |||| ||||||    
T  8029588 tttttcaactgctagttgtagttgttgtggatgttttgaagattttggttgatttttct-attgttattgaatctgaa-aaaaaataaattaggaaatag 8029685  T
Q  118 atatgaagattttggttgatttgctttaggaagattgagaaattgtgttgtttagattgaaagagatgtttataagtggaaaaattggttattgat 213  Q
    |||||||||||||||||||||||||||| | |||||||||||||||||||| ||||||||||||||||||||| | || |||||||||||||||||    
T  8029686 atatgaagattttggttgatttgctttatggagattgagaaattgtgttgtatagattgaaagagatgtttatgaatgaaaaaattggttattgat 8029781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 18 - 213
Target Start/End: Original strand, 19298149 - 19298342
Alignment:
Q  18 tttttcaactgctgattgtagttgttgtggatgttttgaagattttagttgatttttcccattgttattgaatctgaagnnnnnnnnnnttagaaaatag 117  Q
    ||||||||||| |  ||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| |           |||| ||||||    
T  19298149 tttttcaactgttagttgtagttgttgtggatgttttgaagattttggttgatttt-cccattgttattgaatctgga-aaaaaataaattaggaaatag 19298246  T
Q  118 atatgaagattttggttgatttgctttaggaagattgagaaattgtgttgtttagattgaaagagatgtttataagtggaaaaattggttattgat 213  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||| | || |||||||||||||||||    
T  19298247 atatgaagattttggttgatttgttttaggaagattgagaaattgtgttgtgtagattgaaagagatgtttatgaatgaaaaaattggttattgat 19298342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 18 - 213
Target Start/End: Original strand, 40468670 - 40468867
Alignment:
Q  18 tttttcaactgctgattgtagttgttgtggatgttttgaagattttagttgatttttcccattgttattgaatctgaagnnnnnnnnnnttagaaaatag 117  Q
    |||||||||||||  ||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| |           |||| ||||||    
T  40468670 tttttcaactgctagttgtagttgttgtggatgttttgaagattttggttgatttt-cccattgttattgaatctgga-aaaaaataaattaggaaatag 40468767  T
Q  118 atatgaagattttggttgatttgcttta----ggaagattgagaaattgtgttgtttagattgaaagagatgtttataagtggaaaaattggttattgat 213  Q
    ||||||||||||||||||||||||||||    || ||||||||||||||||||||||||||||||| |||||||||| | || |||||||||||||||||    
T  40468768 atatgaagattttggttgatttgctttaattagggagattgagaaattgtgttgtttagattgaaatagatgtttatgaatgaaaaaattggttattgat 40468867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 18 - 213
Target Start/End: Complemental strand, 20686107 - 20685916
Alignment:
Q  18 tttttcaactgctgattgtagttgttgtggatgttttgaagattttagttgatttttcccattgttattgaatctgaagnnnnnnnnnnttagaaaatag 117  Q
    |||||||||||||  |||||||||||||| |||||||||||||||| ||||||||| |||||||||||||||| ||  |          |||| ||||||    
T  20686107 tttttcaactgctagttgtagttgttgtgaatgttttgaagattttggttgatttt-cccattgttattgaatttg--gaaaaaaaaaattaggaaatag 20686011  T
Q  118 atatgaagattttggttgatttgctttaggaagattgagaaattgtgttgtttagattgaaagagatgtttataagtggaaaaattggttattgat 213  Q
    |||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| | || |||||||||||||||||    
T  20686010 atatgaagattt-ggttgatttgctttagggagattgagaaattgtgttgtttagattgaaatagatgtttatgaatgaaaaaattggttattgat 20685916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 115 - 213
Target Start/End: Complemental strand, 3093522 - 3093424
Alignment:
Q  115 tagatatgaagattttggttgatttgctttaggaagattgagaaattgtgttgtttagattgaaagagatgtttataagtggaaaaattggttattgat 213  Q
    ||||||| |||||||||||||||||| |||||| ||||||| |||||||||||||| ||||||||| ||| ||| | | ||||||||||||||||||||    
T  3093522 tagatataaagattttggttgatttggtttagggagattgataaattgtgttgttttgattgaaagggatattttttaatggaaaaattggttattgat 3093424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0202 (Bit Score: 106; Significance: 3e-53; HSPs: 1)
Name: scaffold0202
Description:

Target: scaffold0202; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 18 - 213
Target Start/End: Original strand, 21786 - 21980
Alignment:
Q  18 tttttcaactgctgattgtagttgttgtggatgttttgaagattttagttgatttttcccattgttattgaatctgaagnnnnnnnnnnttagaaaatag 117  Q
    |||||||||||||  ||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| |            ||| ||||||    
T  21786 tttttcaactgctagttgtagttgttgtggatgttttgaagattttggttgatttttcc-attgttattgaatctggaaaataaataaaataggaaatag 21884  T
Q  118 atatgaagattttggttgatttgctttaggaagattgagaaattgtgttgtttagattgaaagagatgtttataagtggaaaaattggttattgat 213  Q
    |||||||| ||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| | || |||||||||||||||||    
T  21885 atatgaaggttttggttgatttgctttagggagattgagaaattgagttgtttagattgaaagagatgtttatgaatgaaaaaattggttattgat 21980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 106; Significance: 3e-53; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 18 - 213
Target Start/End: Complemental strand, 47112571 - 47112378
Alignment:
Q  18 tttttcaactgctgattgtagttgttgtggatgttttgaagattttagttgatttttcccattgttattgaatctgaagnnnnnnnnnnttagaaaatag 117  Q
    ||||||||||| | |||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| |           |||| ||||||    
T  47112571 tttttcaactgttaattgtagttgttgtggatgttttgaagattttggttgatttt-cccattgttattgaatctgga-aaaaaataaattaggaaatag 47112474  T
Q  118 atatgaagattttggttgatttgctttaggaagattgagaaattgtgttgtttagattgaaagagatgtttataagtggaaaaattggttattgat 213  Q
    ||||||| |||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| | || |||||||||||||||||    
T  47112473 atatgaatattttggttgatttgcttcagggagattgagaaattgtgttgtttagattgaaagagatgtttatgaatgaaaaaattggttattgat 47112378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 22 - 213
Target Start/End: Complemental strand, 36142588 - 36142399
Alignment:
Q  22 tcaactgctgattgtagttgttgtggatgttttgaagattttagttgatttttcccattgttattgaatctgaagnnnnnnnnnnttagaaaatagatat 121  Q
    |||||||||  ||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| |           |||| ||||||||||    
T  36142588 tcaactgctagttgtagttgttgtggatgttttgaagattttggttgatttt-cccattgttattgaatctgga-aaataataaattaggaaatagatat 36142491  T
Q  122 gaagattttggttgatttgctttaggaagattgagaaattgtgttgtttagattgaaagagatgtttataagtggaaaaattggttattgat 213  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | |  |||||||| ||||||||    
T  36142490 gaagattttggttgatttgctttagggagattgagaaattgtgttgtttagattgaaagagatgtttatgaatcaaaaaattgattattgat 36142399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 18 - 218
Target Start/End: Complemental strand, 49652858 - 49652662
Alignment:
Q  18 tttttcaactgctgattgtagttgttgtggatgttttgaagattttagttgatttttcccattgttattgaatctgaagnnnnnnnnnnt---tagaaaa 114  Q
    |||||||||||||  ||||  ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||              |||||||    
T  49652858 tttttcaactgctagttgtgattgttgtggatgttttgaagattttggttgatttttcccattgttattgaatctgaaggaaaaaaaaaaaactagaaaa 49652759  T
Q  115 tagatatgaagattttggttgatttgctttaggaagattgagaaattgtgttgtttagattgaaagagatgtttataagtggaaaaattggttattgatg 214  Q
    ||||||| ||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||     
T  49652758 tagatataaagattttggtt-------tttaggaagattgagaaattgtgttgtttagattgaaagagatgtttataaatggaaaaattggttattgatt 49652666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 115 - 211
Target Start/End: Complemental strand, 24508580 - 24508484
Alignment:
Q  115 tagatatgaagattttggttgatttgctttaggaagattgagaaattgtgttgtttagattgaaagagatgtttataagtggaaaaattggttattg 211  Q
    |||||||||||||||||||||||||| | |||| |||||||||||||||||||||||||||||||| ||||||| | | || |||||||||||||||    
T  24508580 tagatatgaagattttggttgatttggtctagggagattgagaaattgtgttgtttagattgaaagggatgttttttaatgaaaaaattggttattg 24508484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 115 - 213
Target Start/End: Complemental strand, 52750537 - 52750438
Alignment:
Q  115 tagatatgaagattttggttgatttgctttaggaagattgagaaattgtgttgtttagattgaaagagatg-tttataagtggaaaaattggttattgat 213  Q
    ||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| |||| ||| | | ||||||||||||||||||||    
T  52750537 tagatataaagattttggttgatttggtttaggaagattgagaaattgtgttgttttgattgaaagggatgtttttttaatggaaaaattggttattgat 52750438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 103; Significance: 2e-51; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 18 - 213
Target Start/End: Original strand, 9086915 - 9087109
Alignment:
Q  18 tttttcaactgctgattgtagttgttgtggatgttttgaagattttagttgatttttcccattgttattgaatctgaagnnnnnnnnnnttagaaaatag 117  Q
    |||||||||||||  ||||||||||||||||||||||||||||||| ||||||||| | |||||||||||||||||||           |||| ||||||    
T  9086915 tttttcaactgctagttgtagttgttgtggatgttttgaagattttggttgatttt-ctcattgttattgaatctgaa-aaaaaaaaaattaggaaatag 9087012  T
Q  118 atatgaagattttggttgatttgctttaggaagattgagaaattgtgttgtttagattgaaagagatgtttataagtg-gaaaaattggttattgat 213  Q
    ||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||| | ||  |||||||||||||||||    
T  9087013 atatgaagattttggttgatttgttttagggagattgagaaattgtgttgtttagattgaaagagatgtttatgaatgaaaaaaattggttattgat 9087109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 20 - 218
Target Start/End: Complemental strand, 40680929 - 40680730
Alignment:
Q  20 tttcaactgctgattgtagttgttgtggatgttttgaagattttagttgatttttcccattgttattgaatctgaagnnnnnnnnnnttagaa--aatag 117  Q
    |||||||||||  ||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||             | ||  |||||    
T  40680929 tttcaactgctagttgtagttgttgtggatgttttgaagattttggttgatttttcc-attgttattgaatctgaaaaaaaaaaaaaaaataagaaatag 40680831  T
Q  118 atatgaagattttggttgatttgctttaggaagattgagaaattgtgttgtttagattgaaagagatgtttataagtggaaaaattggttattgatgatg 217  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | || |||||||| |||||||| |||    
T  40680830 atatgaagattttggttgatttgctttagggagattgagaaattgtgttgtttagattgaaagagatgtttatgaatgaaaaaattgattattgattatg 40680731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 115 - 213
Target Start/End: Original strand, 13631104 - 13631202
Alignment:
Q  115 tagatatgaagattttggttgatttgctttaggaagattgagaaattgtgttgtttagattgaaagagatgtttataagtggaaaaattggttattgat 213  Q
    |||||||||||||||||| ||||||| |||||  ||||||| |||||||||||||||||||||||  ||||||| | | ||||||||||||||||||||    
T  13631104 tagatatgaagattttggatgatttggtttagagagattgataaattgtgttgtttagattgaaatggatgtttttgaatggaaaaattggttattgat 13631202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 115 - 213
Target Start/End: Complemental strand, 50282050 - 50281952
Alignment:
Q  115 tagatatgaagattttggttgatttgctttaggaagattgagaaattgtgttgtttagattgaaagagatgtttataagtggaaaaattggttattgat 213  Q
    |||||||||||||||||||||||||| | |||| ||||||||||||||| |||||||||||||||| |||||   | | ||||||||||| ||||||||    
T  50282050 tagatatgaagattttggttgatttggtctagggagattgagaaattgtattgtttagattgaaagggatgtaatttaatggaaaaattgattattgat 50281952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 149 - 213
Target Start/End: Complemental strand, 44182898 - 44182835
Alignment:
Q  149 agattgagaaattgtgttgtttagattgaaagagatgtttataagtggaaaaattggttattgat 213  Q
    ||||||||||||||| |||||||||||||||| ||||||| | | |||||||| |||||||||||    
T  44182898 agattgagaaattgtattgtttagattgaaagggatgttttttaatggaaaaa-tggttattgat 44182835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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