View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5489-Insertion-1 (Length: 1060)
Name: NF5489-Insertion-1
Description: NF5489
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5489-Insertion-1 |
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Alignment Details
Target: chr7 (Bit Score: 620; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 620; E-Value: 0
Query Start/End: Original strand, 236 - 983
Target Start/End: Complemental strand, 48966040 - 48965299
Alignment:
| Q |
236 |
caaggctggaacctgtaaagaaattaccactggcaagagagcttggattgcagccacatcaggttgctatatgattttagaaaagaagagctccatggaa |
335 |
Q |
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| T |
48966040 |
caaggctggaacctgtaaagaaattacaactggcaagagagcttggattgcagccacatcaggttgctatatgattttagaaaagaagagctccatggaa |
48965941 |
T |
|
| Q |
336 |
gccaattataaccatttggcctcacatcacagtttgttgctcttacgaaagagcaccaggcattgctgctattgctggttcttaaattagactaattaac |
435 |
Q |
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| T |
48965940 |
gccaattataaccatttggcctcacatcacagtttgttgctcttaagaaagagcaccaggcattgctgctattgctggttcttaaattatactaattaac |
48965841 |
T |
|
| Q |
436 |
attcattatcagtgtttgtgatttttgttttagtaaacagatgcaatgttgaatgatcaaatgcaaaagccaacaaaacaatgatgcaaacatcatatgt |
535 |
Q |
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| T |
48965840 |
attcattattagtgtttgtgattttctttttagtaaacagatgcaatgttgaatgatccaatgcaaa-gccaacaaaacaatgtagcaaacatcatatgt |
48965742 |
T |
|
| Q |
536 |
agtgaatcagaaaatgtagaaaggtcagatcacatgtgtggtgtgttccctcggatggtgaccgtagcttaaggatagattactttggtttggaagatga |
635 |
Q |
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||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| |
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| T |
48965741 |
agttaatcagaaaatgtagaaaggtcagatcacatgtgtggtttgttccctcggatggtgaccgtagcttaaggatatattactatggtttggaagatga |
48965642 |
T |
|
| Q |
636 |
aactgaccttaggaacttagttgaggaagctggtggttctttgattcaaattatctttttggccaatcgtccgtttattatcaattgtgccatatctata |
735 |
Q |
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| T |
48965641 |
aactgaccttaggaacttagttgaggaagctggtggttctttgattcaaattatctttttggccaatcgtcggtttattatcaattgtgccatatctata |
48965542 |
T |
|
| Q |
736 |
acaattaacagaggaaggccctagacaacaaactcattctgtttagcacgatgtgtaagataatgaataatctttataacattcatttcaaaatatggag |
835 |
Q |
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||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
48965541 |
acaatgaacagaagaaggccctagacaacaaactcattctgtttagcacgatgtgtaagataatgaataatctttataacattcatttcaaaatat-gag |
48965443 |
T |
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| Q |
836 |
atgtaaagtcaattgagtctaaatgaacagctagtatggttgtttaggcaagacatcatagtacatcaagaggccctgcattgtattggggcagagtaat |
935 |
Q |
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|||| || |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| |||||||||||| |
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| T |
48965442 |
atgttaaatcaattgagtctaaatgaacagctagtatggttgttta-gcaagacatcatagtacatcaaga-gccctgcattgtatt-gggcagagtaat |
48965346 |
T |
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| Q |
936 |
gcatttgattcatgcacaaaataattgttggctccaagttcaggtttt |
983 |
Q |
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| T |
48965345 |
gaatttgattcatgcacaaaataattgtt-gcttcaagttcaggtttt |
48965299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 114; E-Value: 3e-57
Query Start/End: Original strand, 23 - 136
Target Start/End: Complemental strand, 48966151 - 48966038
Alignment:
| Q |
23 |
ggatacttgagaaaacaaatggataggatccatttcagtttcagacagtatacacaagatgctaaatcacacggagtattctcgttcatcggaagaactt |
122 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48966151 |
ggatacttgagaaaacaaatggataggatccatttcagtttcagacagtatacacaagatgctaaatcacacggagtattctcgttcatcggaagaactt |
48966052 |
T |
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| Q |
123 |
acatcaccttacaa |
136 |
Q |
| |
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|||||||||||||| |
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| T |
48966051 |
acatcaccttacaa |
48966038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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