View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5489-Insertion-10 (Length: 481)
Name: NF5489-Insertion-10
Description: NF5489
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5489-Insertion-10 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 451; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 451; E-Value: 0
Query Start/End: Original strand, 8 - 481
Target Start/End: Original strand, 43141835 - 43142308
Alignment:
| Q |
8 |
aattcttgcattgagatatcatgatatacttgcaacacaagaaacattgtaggaatagggaaatctacattgtgtttccttaaatattgctttgtattcc |
107 |
Q |
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| T |
43141835 |
aattcttgcattgagatatcatgatatacttgcaacacaagaaacattgtaggaatagggaaatctacattgtgtttccttaaatattgctttgtattcc |
43141934 |
T |
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| Q |
108 |
ttggcttttgttgtttttagagaaatatccatgatacataatcataaatctgaatattttgtttgctctgcagggatattttatttgcttaacacttgct |
207 |
Q |
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| T |
43141935 |
ttggcttttgttgtttttagagaaatatc-atgatacataatcataaatctgaatattttgtttgctctgcagggatattttatttgcttaacacttgct |
43142033 |
T |
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| Q |
208 |
cttgggtatgcttttgcttct-attttaggtactcattacttaataatgaatgtcatagaatctggaaacgcttccgttgtcatgcgcctatgagaaaga |
306 |
Q |
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| T |
43142034 |
cttgggtatgctcttgcttcttattttaggtactcattacttaataatgaatgtcatagaatctggaaacgcttccgttgtcatgcgcctatgagaaaga |
43142133 |
T |
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| Q |
307 |
ctgcatcttcccccttacaggaacagagcgatcaaacaaatgaaggatgctatgaagaatggcaatagcctttctttcctttgtcatgacataaatgagc |
406 |
Q |
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| T |
43142134 |
ctgcatcttcccccttacaggaacagagcgatcaaacaaatgaaagatgctatgaagaatggcaatagcctttctttcctttgtcatgacataaatgagc |
43142233 |
T |
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| Q |
407 |
ttgagcactcctatcaggccaatcttccaagagtaacagtagtcatataggacacattcccctgaaaaggtttgg |
481 |
Q |
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| T |
43142234 |
ttgagcactcctatcaggccaatcttccaagagtaacagtagtcatataggacacattcccctgaaaaggtttgg |
43142308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 126 - 452
Target Start/End: Original strand, 43153551 - 43153875
Alignment:
| Q |
126 |
agagaaatatccatgatacataatcataaatctgaatattttgtttgctctgcagggatattttatttgcttaacacttgctcttgggtatgcttttgct |
225 |
Q |
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| T |
43153551 |
agagaaatatc-atggtaaataataataaatctgaatgttatgtttactttgcagggatgtttcatttgcttaacacttgctcttgggtgggctcttgct |
43153649 |
T |
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| Q |
226 |
tct-attttaggtactcattacttaataatgaat-gtcatagaatctggaaacgcttccgttgtcatgcgcctatgagaaagactgcatcttccccctta |
323 |
Q |
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| T |
43153650 |
tcttatgttaggtactcattagtcattactcaatagtgtcagaatccagaaacactttcattgtca--cccctatgagaaatactgaatttttccc-tta |
43153746 |
T |
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| Q |
324 |
caggaacagagcgatcaaacaaatgaaggatgctatgaagaatggcaatagcctttctttcctttgtcatgacataaatgagcttgagcactcctatcag |
423 |
Q |
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| T |
43153747 |
caggaacagagagataaaacaaatgaaggaagctatgcagaatggcaatagtctttctttcctatgtcatgacataaatgagcttgagcacttctatcag |
43153846 |
T |
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| Q |
424 |
gccaatcttccaagagtaacagtagtcat |
452 |
Q |
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| T |
43153847 |
gccaatcttccaagagtaacagtagtcat |
43153875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 31 - 68
Target Start/End: Original strand, 43153311 - 43153348
Alignment:
| Q |
31 |
atatacttgcaacacaagaaacattgtaggaataggga |
68 |
Q |
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| T |
43153311 |
atatacttgcaacacaagaaacactgtagggataggga |
43153348 |
T |
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