View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5489-Insertion-12 (Length: 311)
Name: NF5489-Insertion-12
Description: NF5489
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5489-Insertion-12 |
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Alignment Details
Target: chr3 (Bit Score: 287; Significance: 1e-161; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 8 - 301
Target Start/End: Original strand, 51876287 - 51876581
Alignment:
| Q |
8 |
atgcgctgttt-aataagttctccatagataggaccatattcagagaagcattggattgagttgtcggttgtttttgaaggaaaacaaaatgagtttgtt |
106 |
Q |
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| T |
51876287 |
atgcgctgttttaataagttctccatagataggaccatattcagagaagcattggattgagttgtcggttgtttttgaaggaaaacaaaatgagtttgtt |
51876386 |
T |
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| Q |
107 |
ttctgcctaacttttgtgttgtttgttcccttccataaatggtaaattcttgactgtccataaatggaaaaccaacctcttaacacacttgcaaccacac |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51876387 |
ttctgcctaacttttgtgttgtttgttcccttccataaatggtaaattcttgactgtccataaatggaaaaccaacctcttaacacacttgcaaccacac |
51876486 |
T |
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| Q |
207 |
gcctaataacctttgtatataaataattaaataaacacacactttctttcatttgcacaaacatcacattcacattcctattcctattcctattc |
301 |
Q |
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| T |
51876487 |
gcctaataacctttgtatataaataattaaataaacacacactttctttcatttgcacaaacatcacattcacattcctattcctattcctattc |
51876581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 279 - 307
Target Start/End: Complemental strand, 42338525 - 42338497
Alignment:
| Q |
279 |
cattcctattcctattcctattcctattc |
307 |
Q |
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| T |
42338525 |
cattcctattcctattcctattcctattc |
42338497 |
T |
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