View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5489-Insertion-2 (Length: 1014)
Name: NF5489-Insertion-2
Description: NF5489
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5489-Insertion-2 |
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Alignment Details
Target: chr3 (Bit Score: 404; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 166 - 725
Target Start/End: Complemental strand, 37108698 - 37108141
Alignment:
| Q |
166 |
caggaaactgattggagcaaggtatttcaacaaaggcgtcgcttctagactaactgttccactaaactcatcctttgagacacctcgtgacaatgacggc |
265 |
Q |
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| T |
37108698 |
caggaaactgattggagcaaggtatttcaacaaaggctatgcttcgagactaactgtcccactaaattcttcctttgaaacacctcgtgacaatgaaggt |
37108599 |
T |
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| Q |
266 |
catggatcccatactttatcaacggctggtggaaacttcgtacctggagtcagtgtctttggtcaaggcaatggaacagcaaagggtggttcaccaaaag |
365 |
Q |
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| T |
37108598 |
catggatctcatactttatcaacagccggtggaaacatggtacctggagtcagtgtcttcggtcaaggctatggaacagcaaagggtggttcaccaaaag |
37108499 |
T |
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| Q |
366 |
caagagttgcatcatacaaagtttgttggcctccaattaatggcgacgagtgctttgatgcagacatacttgcagcatttgatgcagctatccatgatgg |
465 |
Q |
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| T |
37108498 |
caagagttgcatcatacaaagtttgttggcctccaattaatggcgacgagtgctttgatgcagacatacttgcagcatttgatgcagctatccatgatgg |
37108399 |
T |
|
| Q |
466 |
tgttgatgtcttgtctgtgtcacttggtggctctgcttctaaccttttcaatgatagtgctgctattggatctttccatgctgctaagaaaggtattgtt |
565 |
Q |
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| T |
37108398 |
tgttgatgtcttgtctgtgtcacttggtggctctgcttctaaccttttcaatgatagtgttgctattggatctttccatgctgctaagaaaggtattgtt |
37108299 |
T |
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| Q |
566 |
gttgtttgctctgctggcaatgatgggaccaaaggatgctactgcagaaaatcttgctccttgggtatatcacagtcggtgccagtacaatggatagaga |
665 |
Q |
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| T |
37108298 |
gttgtttgctctgctggcaat-agtggaccaaatgatgctactgcatcaaatctagctcctt-ggtatatcacagttggtgccagcacaatggatagaga |
37108201 |
T |
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| Q |
666 |
gttcgctagttatgttcttctacgcaacggtttaagcttcaaggtttgtctccttttcta |
725 |
Q |
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| T |
37108200 |
gttccctagttatgttgttcttggtaacaatttaaccttcaaggtttgtctctttttcta |
37108141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 935 - 1012
Target Start/End: Complemental strand, 37107485 - 37107406
Alignment:
| Q |
935 |
ttctacccaattataaaagca-cggatgctaaattggcaagtgcaacaataggagatgc-ttagtatcaaacacctgaat |
1012 |
Q |
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| T |
37107485 |
ttctacccaattattaaagcaacagatgctaaattggcaagtgcaacaaatgaagatgcgtaagtatcaaacaactgaat |
37107406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 331 - 474
Target Start/End: Original strand, 39188736 - 39188879
Alignment:
| Q |
331 |
aggcaatggaacagcaaagggtggttcaccaaaagcaagagttgcatcatacaaagtttgttggcctccaattaatggcgacgagtgctttgatgcagac |
430 |
Q |
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| T |
39188736 |
aggcaacggaactgctaaaggtggctctcccaaagcaagagttgctgcttacaaagtctgctggccaccaattgatggcagcgaatgctttgatgctgat |
39188835 |
T |
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| Q |
431 |
atacttgcagcatttgatgcagctatccatgatggtgttgatgt |
474 |
Q |
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| T |
39188836 |
atcatggcagcctttgatatggctattcatgatggggttgatgt |
39188879 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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