View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5489-Insertion-3 (Length: 943)
Name: NF5489-Insertion-3
Description: NF5489
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5489-Insertion-3 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 686; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 686; E-Value: 0
Query Start/End: Original strand, 7 - 772
Target Start/End: Original strand, 18513674 - 18514439
Alignment:
| Q |
7 |
aattttctgatgtaagcaacatttagtgttaataacgcttcagcaaacaccacttagcaacattttagcacctaaactatttgcactttacaaccttggc |
106 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
18513674 |
aattttctgatgtaagcaacatttagtgttaataacgcttcagcaaacacgacttagcaacattttagcacctaaactatttgcactttacaaccttggc |
18513773 |
T |
|
| Q |
107 |
tttcctaattaaatactgtacataagaaatagaaagtggaaatcaatcaaattgcaacat-agagtaatgtttagttgtattcctgaactatagaatgca |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
18513774 |
tttcctaattaaatactgtacataagaaatagaaagtggaaatcaatcaaattgcaactttagagtaatggttagttgtattcctgaactatagaatgca |
18513873 |
T |
|
| Q |
206 |
cacaagcttgtaatttggtttttctaactctgtagtcaacagcgcatagaaaagcgcagaggctggggccagaaacgctatagtggcatggccattagaa |
305 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
18513874 |
cgcaagcttgtaatttggtttttctaactctgtagtcaacagcgcatagaaaagcgcagaggctggggccagaaacgctatagtggcatggccattagaa |
18513973 |
T |
|
| Q |
306 |
cgaagtttagggaaacaatacaagaaatttataccaaaacacgatacacttaatagcttagaagtagagcaggacatgaaattgaagacatttatagcta |
405 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
18513974 |
cgaagtttagggaaacaatacaagaaatttataccaaaacacgatacacttaaaagcttagaagtagaacaggacatgaaattgaagacatttatagcta |
18514073 |
T |
|
| Q |
406 |
ataatcaaagttcattgctaacagtatttacacgtaatacaaccaaagcaccatacacataaaagctcaaaaatagaacacggcataaaattgaagacat |
505 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
18514074 |
ataatcaaagttcattgctaacagtatttacacgtaatacaaccaaagcaccatacacataaaagctcaaaaatagaacatggcataaaattgaagacat |
18514173 |
T |
|
| Q |
506 |
tcatagctaataatcaaagttcattgttacaagtatttaaacctaatacaaagcaaataaatttcagggcaaaatgactaaataaaaagtaacaggggaa |
605 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18514174 |
tcatagctaataatcaaagttcattgttacaagtatttaaacctaatacaaagcaaataaatttcagggcaaaatgactaaataaaaagtaacaggggaa |
18514273 |
T |
|
| Q |
606 |
acagtgaactttgatttgacaattagagtatgcactttaaagtgcgggtttaaagtatacgcctagggcctgctaggcaacatcgggctaatactaactc |
705 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| || ||||||||| ||||| |
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|
| T |
18514274 |
acaatgaactttgatttgacaattagagtatgcactttaaagtgcgggtttaaagtatgcgcctagggcctgctaggcaacgtc-ggctaataccaactc |
18514372 |
T |
|
| Q |
706 |
caaagatctaattgtcaatnnnnnnncaactaatccttgctaattactataagttaaaccatgattt |
772 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
18514373 |
caaagatctaattgtcaataaaaaaacaactaatccttgctaattactataagttaaaccatgattt |
18514439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 841 - 942
Target Start/End: Original strand, 18514507 - 18514611
Alignment:
| Q |
841 |
cgatacattgtacacggacacgattta-ctcaaattccaaca-gtaaatcacggaacagggacttcctttc-acaagtctgtagatatcaagctctcaac |
937 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||| |||| |||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| |
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| T |
18514507 |
cgatacattgtacacggacacgatttaactcaaattcaaacaagtaaatcacggaacagggacttactttccacaagtctgtagatatcaagctctcaac |
18514606 |
T |
|
| Q |
938 |
atatg |
942 |
Q |
| |
|
||||| |
|
|
| T |
18514607 |
atatg |
18514611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 309 - 341
Target Start/End: Complemental strand, 8963778 - 8963746
Alignment:
| Q |
309 |
agtttagggaaacaatacaagaaatttatacca |
341 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
8963778 |
agtttagggaaacaatacaagaaatttatacca |
8963746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 105; Significance: 6e-52; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 105; E-Value: 6e-52
Query Start/End: Original strand, 447 - 587
Target Start/End: Complemental strand, 14515594 - 14515454
Alignment:
| Q |
447 |
accaaagcaccatacacataaaagctcaaaaatagaacacggcataaaattgaagacattcatagctaataatcaaagttcattgttacaagtatttaaa |
546 |
Q |
| |
|
|||||||||||||||| | |||||||||||||||||||| | ||||||||||||| |||||||||||||||| | |||||||||||||| |||||||||| |
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|
| T |
14515594 |
accaaagcaccatacatacaaaagctcaaaaatagaacaggacataaaattgaaggcattcatagctaataaccgaagttcattgttaccagtatttaaa |
14515495 |
T |
|
| Q |
547 |
cctaatacaaagcaaataaatttcagggcaaaatgactaaa |
587 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
14515494 |
cctaatactaagcaaataaatttcagggcaaaatgactaaa |
14515454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 182 - 445
Target Start/End: Complemental strand, 14515750 - 14515487
Alignment:
| Q |
182 |
tgtattcctgaactatagaatgcacacaagcttgtaatttggtttttctaactctgtagtcaacagcgcatagaaaagcgcagaggctggggccagaaac |
281 |
Q |
| |
|
|||||||||| |||| ||||||||| ||||||| ||| | |||| ||||| |||||||||||| ||||||| | | | |||||| || || |||| |
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|
| T |
14515750 |
tgtattcctgcactagagaatgcactcaagcttataactcggttcatctaaatctgtagtcaacgacgcatagcagaacaaagaggcaaggccctaaaac |
14515651 |
T |
|
| Q |
282 |
gctatagtggcatggccattagaacgaagtttagggaaacaatacaagaaatttataccaaaacacgatacacttaatagcttagaagtagagcaggaca |
381 |
Q |
| |
|
|| ||||| ||||||||||| |||||||||| ||||||||||||||||||||||||||| ||| ||||| || |||| | || |||| ||||||| |
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|
| T |
14515650 |
gcaatagtttcatggccattacgtcgaagtttagagaaacaatacaagaaatttataccaaagcaccatacatacaaaagctcaaaaatagaacaggaca |
14515551 |
T |
|
| Q |
382 |
tgaaattgaagacatttatagctaataatcaaagttcattgctaacagtatttacacgtaatac |
445 |
Q |
| |
|
| ||||||||| |||| ||||||||||| | |||||||||| || ||||||||| || |||||| |
|
|
| T |
14515550 |
taaaattgaaggcattcatagctaataaccgaagttcattgttaccagtatttaaacctaatac |
14515487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 43 - 162
Target Start/End: Original strand, 14515821 - 14515940
Alignment:
| Q |
43 |
gcttcagcaaacaccacttagcaacattttagcacctaaactatttgcactttacaaccttggctttcctaattaaatactgtacataagaaatagaaag |
142 |
Q |
| |
|
|||| ||||| |||||||||||| ||||||||||||||||||||||||| | ||||||||| |||||||||| ||||||||| |||||||||||||| || |
|
|
| T |
14515821 |
gctttagcaagcaccacttagcagcattttagcacctaaactatttgcagtctacaaccttagctttcctaagtaaatactgcacataagaaatagagag |
14515920 |
T |
|
| Q |
143 |
tggaaatcaatcaaattgca |
162 |
Q |
| |
|
|| |||||||||| |||||| |
|
|
| T |
14515921 |
tgcaaatcaatcagattgca |
14515940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 513 - 548
Target Start/End: Complemental strand, 16755989 - 16755954
Alignment:
| Q |
513 |
taataatcaaagttcattgttacaagtatttaaacc |
548 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||| |
|
|
| T |
16755989 |
taataatcaaagttcattgttacaagtattcaaacc |
16755954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 48; Significance: 6e-18; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 455 - 566
Target Start/End: Original strand, 6934761 - 6934872
Alignment:
| Q |
455 |
accatacacataaaagctcaaaaatagaacacggcataaaattgaagacattcatagctaataatcaaagttcattgttacaagtatttaaacctaatac |
554 |
Q |
| |
|
||||||||||||||||||||||| || || | ||||||| |||| |||||||||||||||||||||||||||||||| | ||||||||| || || |
|
|
| T |
6934761 |
accatacacataaaagctcaaaactataatagtaaataaaatcaaagaaattcatagctaataatcaaagttcattgttaccaatatttaaacgcaagac |
6934860 |
T |
|
| Q |
555 |
aaagcaaataaa |
566 |
Q |
| |
|
||| |||||||| |
|
|
| T |
6934861 |
aaaacaaataaa |
6934872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.000000001; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 83
Target Start/End: Complemental strand, 13112031 - 13111990
Alignment:
| Q |
42 |
cgcttcagcaaacaccacttagcaacattttagcacctaaac |
83 |
Q |
| |
|
||||||||||| |||||||||||| ||||||||||||||||| |
|
|
| T |
13112031 |
cgcttcagcaagcaccacttagcagcattttagcacctaaac |
13111990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 494 - 565
Target Start/End: Complemental strand, 10299446 - 10299375
Alignment:
| Q |
494 |
aattgaagacattcatagctaataatcaaagttcattgttacaagtatttaaacctaatacaaagcaaataa |
565 |
Q |
| |
|
|||| |||||||||||| |||| ||||||| ||||||| ||||| ||| || || |||||||||||||||| |
|
|
| T |
10299446 |
aattaaagacattcataactaacaatcaaatttcattgctacaaatatgcaagcccaatacaaagcaaataa |
10299375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 512 - 565
Target Start/End: Original strand, 29506600 - 29506653
Alignment:
| Q |
512 |
ctaataatcaaagttcattgttacaagtatttaaacctaatacaaagcaaataa |
565 |
Q |
| |
|
|||||||||||||||||||||||| | |||| ||||| || | ||||||||||| |
|
|
| T |
29506600 |
ctaataatcaaagttcattgttactaatattcaaacccaacataaagcaaataa |
29506653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 492 - 565
Target Start/End: Complemental strand, 32857418 - 32857346
Alignment:
| Q |
492 |
aaaattgaagacattcatagctaataatcaaagttcattgttacaagtatttaaacctaatacaaagcaaataa |
565 |
Q |
| |
|
|||||| ||||||||||||| || |||||||||||||||||||||| ||| ||||| ||| ||||||||||| |
|
|
| T |
32857418 |
aaaattaaagacattcatag-tattaatcaaagttcattgttacaaacattcaaaccaaatgtaaagcaaataa |
32857346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 306 - 341
Target Start/End: Complemental strand, 25474320 - 25474285
Alignment:
| Q |
306 |
cgaagtttagggaaacaatacaagaaatttatacca |
341 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||| |
|
|
| T |
25474320 |
cgaagtttagggaaacaatacaagaaattcatacca |
25474285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 504 - 565
Target Start/End: Complemental strand, 14979930 - 14979869
Alignment:
| Q |
504 |
attcatagctaataatcaaagttcattgttacaagtatttaaacctaatacaaagcaaataa |
565 |
Q |
| |
|
||||||| ||||||||||||||||| || ||| | |||||||||| |||| ||||||||||| |
|
|
| T |
14979930 |
attcataactaataatcaaagttcactgctaccattatttaaacccaatataaagcaaataa |
14979869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 458 - 535
Target Start/End: Complemental strand, 29433369 - 29433290
Alignment:
| Q |
458 |
atacacataaaagctcaaaaatagaacacggcataaaattgaagac--attcatagctaataatcaaagttcattgttac |
535 |
Q |
| |
|
||||| ||||||||| |||||||||| | || |||||| ||||| ||||||||| |||||||||||||||||||||| |
|
|
| T |
29433369 |
atacatataaaagcttaaaaatagaagaatacacaaaattaaagacgtattcatagccaataatcaaagttcattgttac |
29433290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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