View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5489-Insertion-4 (Length: 925)

Name: NF5489-Insertion-4
Description: NF5489
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5489-Insertion-4
NF5489-Insertion-4
[»] chr2 (9 HSPs)
chr2 (7-596)||(8257576-8258165)
chr2 (732-923)||(8258558-8258751)
chr2 (608-699)||(8258223-8258313)
chr2 (691-731)||(8258496-8258536)
chr2 (20-66)||(8033486-8033532)
chr2 (13-94)||(6510994-6511075)
chr2 (11-94)||(17627849-17627932)
chr2 (13-94)||(17184753-17184834)
chr2 (13-94)||(22191535-22191616)
[»] chr5 (5 HSPs)
chr5 (15-94)||(11275811-11275890)
chr5 (36-91)||(24866809-24866864)
chr5 (678-725)||(42954804-42954851)
chr5 (17-67)||(5971764-5971814)
chr5 (20-69)||(8285028-8285077)
[»] chr3 (3 HSPs)
chr3 (15-97)||(27812179-27812261)
chr3 (14-95)||(47064272-47064352)
chr3 (14-82)||(39840648-39840716)
[»] chr7 (5 HSPs)
chr7 (678-729)||(29292189-29292240)
chr7 (11-93)||(22794613-22794695)
chr7 (14-94)||(12427810-12427890)
chr7 (15-97)||(30935181-30935264)
chr7 (13-67)||(41008943-41008997)
[»] chr8 (4 HSPs)
chr8 (11-98)||(10028624-10028711)
chr8 (674-731)||(11364481-11364538)
chr8 (36-90)||(13169466-13169520)
chr8 (15-69)||(41424410-41424464)
[»] chr4 (5 HSPs)
chr4 (11-69)||(40942694-40942752)
chr4 (13-94)||(3465364-3465445)
chr4 (15-99)||(54091049-54091133)
chr4 (677-725)||(23407668-23407716)
chr4 (24-69)||(3692394-3692439)
[»] chr1 (8 HSPs)
chr1 (14-71)||(10377568-10377625)
chr1 (14-93)||(34835740-34835819)
chr1 (24-95)||(38576550-38576621)
chr1 (13-103)||(15395161-15395251)
chr1 (14-94)||(6219602-6219682)
chr1 (13-71)||(28504711-28504769)
chr1 (15-68)||(27293283-27293336)
chr1 (13-97)||(46410618-46410703)
[»] scaffold0198 (1 HSPs)
scaffold0198 (23-91)||(11907-11975)
[»] scaffold0154 (1 HSPs)
scaffold0154 (15-94)||(6243-6322)
[»] chr6 (3 HSPs)
chr6 (678-725)||(13436839-13436886)
chr6 (13-91)||(9530527-9530605)
chr6 (14-71)||(3960874-3960931)


Alignment Details
Target: chr2 (Bit Score: 423; Significance: 0; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 7 - 596
Target Start/End: Original strand, 8257576 - 8258165
Alignment:
Q  7 agaaaaagactaatttaaaataataatagagtcaaagactaatttaaaaatgagttacaaagacatggatcaatttaatggtttactcgttatataatag 106  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| ||    
T  8257576 agaaaaagattaatttaaaataataatagagtcaaagactaatttaaaaatgagttacatagacatggatcaatttgatggtttactcgttatataacag 8257675  T
Q  107 tagatattttaactcctagactac---acctctctttggtcgacacaccacaactcacttaacccgtgaaactttcatgttcagccaatttccaccacac 203  Q
    ||| ||||||||||||||||| ||   ||||||||||||||||||||||||||||||    |||||| |||||||| |||||||||||||||||||||||    
T  8257676 taggtattttaactcctagacaaccacacctctctttggtcgacacaccacaactca----acccgttaaactttcttgttcagccaatttccaccacac 8257771  T
Q  204 catgaaactttgatgtaacatgaccaccacacttttgacaaacatcttagaaaaggatagataatagatgggaatataagaaaggggtgtgtttagaatc 303  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||    
T  8257772 catgaaactttgatgtaacatgaccatcacacttttgacaaacatcttagaaaaggatagataatagatgggaatataagaaagggatgagtttataatc 8257871  T
Q  304 acgatcctctcttgggggctgacatgcattttcagacatggtatttgacccctttaatgtattcnnnnnnnnctttcttttctatgctttatgttgacag 403  Q
    ||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||||||        |||||||||||||| |||||||||| ||    
T  8257872 acgatcctctcttgggggctgacatacattttcatacatggtatttgactcctttaatgtattcttttttttctttcttttctatgttttatgttgatag 8257971  T
Q  404 aacaatagtaatgtcccgcgaaaacgatgattatgtgttagatattacgatttaaaattgcatatattggaaatatatttgacataatataattggttga 503  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||    
T  8257972 aacaatagtaatgtcccgcgaaaacgatgattatgttttagatattacgatttaaaattgcatatattggaaatacatttgacataatatatttggttga 8258071  T
Q  504 gttaaatagacacat-gctagtgttttaaaaatcaagaaagttgaggtaaatgaacgcgtggctagtgattttcaaatcaagaatattgatgaa 596  Q
    ||||||||||||  | |||| |||||||||||||||||||||||| |||||||| ||| || ||||||||||||||||||||||||||||||||    
T  8258072 gttaaatagacatgtggctattgttttaaaaatcaagaaagttgatgtaaatgagcgcatgactagtgattttcaaatcaagaatattgatgaa 8258165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 134; E-Value: 3e-69
Query Start/End: Original strand, 732 - 923
Target Start/End: Original strand, 8258558 - 8258751
Alignment:
Q  732 attagagttgcatattgaagaatttt-ttaacgagattgcattactatgtctttagaacctccattgtcacaaaagacgagaaatatatcgaaaagttgg 830  Q
    |||||||||||||||||||||||||| ||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  8258558 attagagttgcatattgaagaatttttttaacgaaattgcatgactatgtctttagaacctccattgtcacaaaagacgagaaatatattgaaaagttgg 8258657  T
Q  831 aaatatatgtgacgatttca-atagtatatgagaaaatacacttgacataatattattgatgagacaaatgaagatgttgctagtaatcctaaa 923  Q
    |||||||||  | ||||  | |||||||||||  ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  8258658 aaatatatgacatgattcaatatagtatatgatgaaatacacttgacataatattattgatgagacaaatgaagacgttgctagtaatcctaaa 8258751  T

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Target: chr2; HSP #3
Raw Score: 80; E-Value: 5e-37
Query Start/End: Original strand, 608 - 699
Target Start/End: Original strand, 8258223 - 8258313
Alignment:
Q  608 aaacttctatattttcctttctcctttactatgtattaagaaacatcaagtttatttggggttatcatccatcaattttacctttcatttaa 699  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||    
T  8258223 aaacttctatattttcctttctcctttactatgtattaagaa-catcaagtttatttggggttatcatccatcaattttaccttttatttaa 8258313  T

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Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 691 - 731
Target Start/End: Original strand, 8258496 - 8258536
Alignment:
Q  691 ttcatttaataatcaattcacaatcatcaatttatcacatt 731  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  8258496 ttcatttaataatcaattcacaatcatcaatttatcacatt 8258536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 66
Target Start/End: Complemental strand, 8033532 - 8033486
Alignment:
Q  20 tttaaaataataatagagtcaaagactaatttaaaaatgagttacaa 66  Q
    ||||||||| ||||||||||||||||||||| |||||||| ||||||    
T  8033532 tttaaaatattaatagagtcaaagactaattaaaaaatgacttacaa 8033486  T

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Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 94
Target Start/End: Complemental strand, 6511075 - 6510994
Alignment:
Q  13 agactaatttaaaataataatagagtcaaagactaatttaaaaatgagttacaaagacatggatcaatttaatggtttactc 94  Q
    |||||| ||| ||||| ||| ||| ||| |||||||||| ||||||| ||| ||||||||  | ||||||||||||||||||    
T  6511075 agactattttgaaatattaacagaatcatagactaatttgaaaatgacttataaagacattaaacaatttaatggtttactc 6510994  T

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Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 94
Target Start/End: Complemental strand, 17627932 - 17627849
Alignment:
Q  11 aaagactaatttaaaataataatagagtcaaagactaatttaaaaatgagttacaaagacatggatcaatttaatggtttactc 94  Q
    |||||||| ||| ||||| |||||||||    ||||||||| ||| ||| ||| ||| ||||||||||||||| ||||||||||    
T  17627932 aaagactattttgaaatattaatagagttggtgactaatttgaaagtgacttaaaaatacatggatcaatttagtggtttactc 17627849  T

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Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 94
Target Start/End: Complemental strand, 17184834 - 17184753
Alignment:
Q  13 agactaatttaaaataataatagagtcaaagactaatttaaaaatgagttacaaagacatggatcaatttaatggtttactc 94  Q
    |||||| ||||||||| ||||||||||| |||||| ||| | |||   ||||||||||||| | |||||| || ||||||||    
T  17184834 agactagtttaaaatattaatagagtcagagactagtttgataatagcttacaaagacatgaaccaatttgatagtttactc 17184753  T

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Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 94
Target Start/End: Original strand, 22191535 - 22191616
Alignment:
Q  13 agactaatttaaaataataatagagtcaaagactaatttaaaaatgagttacaaagacatggatcaatttaatggtttactc 94  Q
    |||||| ||||||||| |||||||||||  ||||||||| | | ||| |||||||| || ||||||| ||  ||||||||||    
T  22191535 agactattttaaaatattaatagagtcagggactaatttgagagtgacttacaaaggcaaggatcaaattggtggtttactc 22191616  T

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Target: chr5 (Bit Score: 52; Significance: 2e-20; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 15 - 94
Target Start/End: Original strand, 11275811 - 11275890
Alignment:
Q  15 actaatttaaaataataatagagtcaaagactaatttaaaaatgagttacaaagacatggatcaatttaatggtttactc 94  Q
    |||||||||||||| ||||| ||||| |||||||||| | ||||| ||||||||||||||| ||||||||||||||||||    
T  11275811 actaatttaaaatattaataaagtcagagactaatttgagaatgatttacaaagacatggaacaatttaatggtttactc 11275890  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 91
Target Start/End: Complemental strand, 24866864 - 24866809
Alignment:
Q  36 agtcaaagactaatttaaaaatgagttacaaagacatggatcaatttaatggttta 91  Q
    |||||| ||||||||||||||  | |||||||||||| ||||||||| ||||||||    
T  24866864 agtcaatgactaatttaaaaacaacttacaaagacatagatcaatttgatggttta 24866809  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 678 - 725
Target Start/End: Complemental strand, 42954851 - 42954804
Alignment:
Q  678 atcaattttacctttcatttaataatcaattcacaatcatcaatttat 725  Q
    |||||||||||||||||||| | |||||||||||||| |||| |||||    
T  42954851 atcaattttacctttcatttcacaatcaattcacaattatcattttat 42954804  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 67
Target Start/End: Complemental strand, 5971814 - 5971764
Alignment:
Q  17 taatttaaaataataatagagtcaaagactaatttaaaaatgagttacaaa 67  Q
    |||||| ||||| ||||||||||| |||| ||||||||||||| |||||||    
T  5971814 taatttgaaatattaatagagtcatagaccaatttaaaaatgatttacaaa 5971764  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 69
Target Start/End: Complemental strand, 8285077 - 8285028
Alignment:
Q  20 tttaaaataataatagagtcaaagactaatttaaaaatgagttacaaaga 69  Q
    ||||||||| ||||||||||| ||||||| |||||||| | |||||||||    
T  8285077 tttaaaatattaatagagtcatagactaaattaaaaatcacttacaaaga 8285028  T

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Target: chr3 (Bit Score: 47; Significance: 2e-17; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 15 - 97
Target Start/End: Complemental strand, 27812261 - 27812179
Alignment:
Q  15 actaatttaaaataataatagagtcaaagactaatttaaaaatgagttacaaagacatggatcaatttaatggtttactcgtt 97  Q
    |||||||| ||||| ||||||| ||| |||||||||||| ||||| |||||||||||| ||||||||| || |||||||||||    
T  27812261 actaatttgaaatattaatagactcagagactaatttaagaatgacttacaaagacattgatcaatttgatagtttactcgtt 27812179  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 95
Target Start/End: Complemental strand, 47064352 - 47064272
Alignment:
Q  14 gactaatttaaaataataatagagtcaaagactaatttaaaaatgagttacaaagacatggatcaatttaatggtttactcg 95  Q
    ||||| ||| ||||| ||| ||||||||||||||||| | || ||| ||||||| |||||||| ||||||||||||| ||||    
T  47064352 gactagtttgaaatattaacagagtcaaagactaattgagaa-tgacttacaaaaacatggataaatttaatggtttgctcg 47064272  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 82
Target Start/End: Complemental strand, 39840716 - 39840648
Alignment:
Q  14 gactaatttaaaataataatagagtcaaagactaatttaaaaatgagttacaaagacatggatcaattt 82  Q
    ||||| ||| ||||| ||||||||||| |||||||||| | ||| | ||||||||||| ||||||||||    
T  39840716 gactattttgaaatattaatagagtcagagactaatttgagaatcacttacaaagacagggatcaattt 39840648  T

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Target: chr7 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 678 - 729
Target Start/End: Complemental strand, 29292240 - 29292189
Alignment:
Q  678 atcaattttacctttcatttaataatcaattcacaatcatcaatttatcaca 729  Q
    ||||||||||||||||| ||||||||||||||||||| ||||||||||||||    
T  29292240 atcaattttacctttcacttaataatcaattcacaattatcaatttatcaca 29292189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 11 - 93
Target Start/End: Complemental strand, 22794695 - 22794613
Alignment:
Q  11 aaagactaatttaaaataataatagagtcaaagactaatttaaaaatgagttacaaagacatggatcaatttaatggtttact 93  Q
    |||||||| |||||||||  ||||||||| | ||||||||| ||||||| |||||||||||  ||||||||| ||||| ||||    
T  22794695 aaagactagtttaaaatatcaatagagtcgatgactaatttgaaaatgacttacaaagacaatgatcaatttgatggtatact 22794613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 14 - 94
Target Start/End: Complemental strand, 12427890 - 12427810
Alignment:
Q  14 gactaatttaaaataataatagagtcaaagactaatttaaaaatgagttacaaagacatggatcaatttaatggtttactc 94  Q
    ||||||||||||||| |||||||||||   |||||||| | ||||| |||||||||||  || |||||||||| |||||||    
T  12427890 gactaatttaaaatattaatagagtcatgaactaatttgagaatgacttacaaagacagtgaccaatttaatgatttactc 12427810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 15 - 97
Target Start/End: Complemental strand, 30935264 - 30935181
Alignment:
Q  15 actaatttaaaataataatagagtcaaagactaatttaaaaatgagtt-acaaagacatggatcaatttaatggtttactcgtt 97  Q
    |||| ||| ||||| |||||||||| || |||||||||| ||||| || ||||||| | ||||||||||||||||||| |||||    
T  30935264 actagtttgaaatattaatagagtctaaaactaatttaagaatgactttacaaagatagggatcaatttaatggtttattcgtt 30935181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 67
Target Start/End: Original strand, 41008943 - 41008997
Alignment:
Q  13 agactaatttaaaataataatagagtcaaagactaatttaaaaatgagttacaaa 67  Q
    |||||| ||||||||| ||||||||||| ||| |||||| ||||||| |||||||    
T  41008943 agactattttaaaatattaatagagtcagagattaatttgaaaatgacttacaaa 41008997  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 11 - 98
Target Start/End: Complemental strand, 10028711 - 10028624
Alignment:
Q  11 aaagactaatttaaaataataatagagtcaaagactaatttaaaaatgagttacaaagacatggatcaatttaatggtttactcgtta 98  Q
    |||||||||||| ||||| |||||||||||  ||||||||| | ||||| ||||||| |||| |||||||||  ||||||||| ||||    
T  10028711 aaagactaatttgaaatattaatagagtcagtgactaatttgagaatgacttacaaatacattgatcaatttggtggtttacttgtta 10028624  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 674 - 731
Target Start/End: Complemental strand, 11364538 - 11364481
Alignment:
Q  674 atccatcaattttacctttcatttaataatcaattcacaatcatcaatttatcacatt 731  Q
    |||| |||||||||||||| ||||||||| ||||| ||||| ||||||||||||||||    
T  11364538 atccctcaattttacctttgatttaataaacaatttacaattatcaatttatcacatt 11364481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 36 - 90
Target Start/End: Complemental strand, 13169520 - 13169466
Alignment:
Q  36 agtcaaagactaatttaaaaatgagttacaaagacatggatcaatttaatggttt 90  Q
    ||||| |||||| ||| | |||||||||||||||||||||| |||||| ||||||    
T  13169520 agtcatagactagtttgagaatgagttacaaagacatggattaatttagtggttt 13169466  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 15 - 69
Target Start/End: Complemental strand, 41424464 - 41424410
Alignment:
Q  15 actaatttaaaataataatagagtcaaagactaatttaaaaatgagttacaaaga 69  Q
    |||||||||||||| ||||||||||| ||||| |||| ||||| | |||||||||    
T  41424464 actaatttaaaatattaatagagtcagagactgatttgaaaattacttacaaaga 41424410  T

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Target: chr4 (Bit Score: 39; Significance: 0.000000000001; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 11 - 69
Target Start/End: Original strand, 40942694 - 40942752
Alignment:
Q  11 aaagactaatttaaaataataatagagtcaaagactaatttaaaaatgagttacaaaga 69  Q
    |||||||||||||||||| ||||| ||||| ||||||||||||||| || |||||||||    
T  40942694 aaagactaatttaaaatattaatatagtcatagactaatttaaaaacgacttacaaaga 40942752  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 13 - 94
Target Start/End: Complemental strand, 3465445 - 3465364
Alignment:
Q  13 agactaatttaaaataataatagagtcaaagactaatttaaaaatgagttacaaagacatggatcaatttaatggtttactc 94  Q
    |||||||||||||||| ||||| ||||| | |||||||||| ||||| ||||||||| ||| |  ||||| |||||||||||    
T  3465445 agactaatttaaaatattaataaagtcatatactaatttaagaatgaattacaaagatatgaacgaatttgatggtttactc 3465364  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 15 - 99
Target Start/End: Original strand, 54091049 - 54091133
Alignment:
Q  15 actaatttaaaataataatagagtcaaagactaatttaaaaatgagttacaaagacatggatcaatttaatggtttactcgttat 99  Q
    |||| ||||||||| |||| ||||||| ||||||||| | ||||| |||||| ||||| ||| ||||| ||||||||||| ||||    
T  54091049 actagtttaaaatattaattgagtcaatgactaatttgagaatgacttacaacgacatagattaatttgatggtttactcattat 54091133  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 677 - 725
Target Start/End: Original strand, 23407668 - 23407716
Alignment:
Q  677 catcaattttacctttcatttaataatcaattcacaatcatcaatttat 725  Q
    ||||||||||||||||||||| | |||||||||||||| |||| |||||    
T  23407668 catcaattttacctttcatttcacaatcaattcacaattatcattttat 23407716  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 69
Target Start/End: Original strand, 3692394 - 3692439
Alignment:
Q  24 aaataataatagagtcaaagactaatttaaaaatgagttacaaaga 69  Q
    ||||| ||||||| | |||||||||||||||||||| |||||||||    
T  3692394 aaatattaatagaatgaaagactaatttaaaaatgatttacaaaga 3692439  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000006; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 14 - 71
Target Start/End: Original strand, 10377568 - 10377625
Alignment:
Q  14 gactaatttaaaataataatagagtcaaagactaatttaaaaatgagttacaaagaca 71  Q
    ||||||||| ||||| |||||||||||||||||||||| | ||||| |||||||||||    
T  10377568 gactaatttgaaatattaatagagtcaaagactaatttgataatgacttacaaagaca 10377625  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 14 - 93
Target Start/End: Original strand, 34835740 - 34835819
Alignment:
Q  14 gactaatttaaaataataatagagtcaaagactaatttaaaaatgagttacaaagacatggatcaatttaatggtttact 93  Q
    ||||||||||||||| ||||||||| | | |||||||||||||| | ||||||| | | ||| |||||| ||||||||||    
T  34835740 gactaatttaaaatattaatagagttagaaactaatttaaaaataacttacaaaaatagggaccaatttgatggtttact 34835819  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 24 - 95
Target Start/End: Complemental strand, 38576621 - 38576550
Alignment:
Q  24 aaataataatagagtcaaagactaatttaaaaatgagttacaaagacatggatcaatttaatggtttactcg 95  Q
    ||||| ||||||| |||||||||||||| | ||||| ||||||||| | ||| ||||||||| |||||||||    
T  38576621 aaatattaatagaatcaaagactaatttgagaatgatttacaaagataaggaccaatttaattgtttactcg 38576550  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 13 - 103
Target Start/End: Complemental strand, 15395251 - 15395161
Alignment:
Q  13 agactaatttaaaataataatagagtcaaagactaatttaaaaatgagttacaaagacatggatcaatttaatggtttactcgttatataa 103  Q
    |||||| ||||||||| ||||||||||| |||||||||| | ||| | ||||||| |||  || ||||| |||| |||||||| |||||||    
T  15395251 agactattttaaaatattaatagagtcatagactaatttgagaatcatttacaaaaacagagaccaattaaatgatttactcgatatataa 15395161  T

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Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 94
Target Start/End: Complemental strand, 6219682 - 6219602
Alignment:
Q  14 gactaatttaaaataataatagagtcaaagactaatttaaaaatgagttacaaagacatggatcaatttaatggtttactc 94  Q
    ||||||||||||||| ||||| | ||| |||||| ||||| ||||| ||| |||||||   |||||||| |||||||||||    
T  6219682 gactaatttaaaatattaataaaatcatagactagtttaagaatgacttataaagacaaaaatcaatttgatggtttactc 6219602  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 71
Target Start/End: Complemental strand, 28504769 - 28504711
Alignment:
Q  13 agactaatttaaaataataatagagtcaaagactaatttaaaaatgagttacaaagaca 71  Q
    |||||| ||| ||||| ||||||||||| |||||||||| | ||||| |||||||||||    
T  28504769 agactagtttgaaatattaatagagtcatagactaatttgagaatgacttacaaagaca 28504711  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 68
Target Start/End: Complemental strand, 27293336 - 27293283
Alignment:
Q  15 actaatttaaaataataatagagtcaaagactaatttaaaaatgagttacaaag 68  Q
    |||||||| ||||| ||||||||||| |||||||||| | ||||| ||||||||    
T  27293336 actaatttgaaatattaatagagtcagagactaatttgagaatgatttacaaag 27293283  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 97
Target Start/End: Complemental strand, 46410703 - 46410618
Alignment:
Q  13 agactaatttaaaataataatagagtcaaagactaatttaa-aaatgagttacaaagacatggatcaatttaatggtttactcgtt 97  Q
    |||||| ||| ||||| ||||| | |||  ||||||||||| |||| | ||||||||||||||| |||||  ||||||||||||||    
T  46410703 agactattttgaaatattaatatattcatggactaatttaagaaatcacttacaaagacatggaccaattcgatggtttactcgtt 46410618  T

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Target: scaffold0198 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: scaffold0198
Description:

Target: scaffold0198; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 23 - 91
Target Start/End: Original strand, 11907 - 11975
Alignment:
Q  23 aaaataataatagagtcaaagactaatttaaaaatgagttacaaagacatggatcaatttaatggttta 91  Q
    |||||| |||| ||||||  ||||||||| | | ||| |||||||||||||||||||||| ||||||||    
T  11907 aaaatattaattgagtcatggactaatttgagagtgacttacaaagacatggatcaatttgatggttta 11975  T

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Target: scaffold0154 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 94
Target Start/End: Original strand, 6243 - 6322
Alignment:
Q  15 actaatttaaaataataatagagtcaaagactaatttaaaaatgagttacaaagacatggatcaatttaatggtttactc 94  Q
    |||| ||| ||||| |||||||||||||||||||||| | ||| | ||||||| ||| ||| |||||| || ||||||||    
T  6243 actattttgaaatattaatagagtcaaagactaatttgagaataacttacaaaaacagggaccaatttgatagtttactc 6322  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 678 - 725
Target Start/End: Original strand, 13436839 - 13436886
Alignment:
Q  678 atcaattttacctttcatttaataatcaattcacaatcatcaatttat 725  Q
    |||||||||||||||||||| | |||||||||||||| |||| |||||    
T  13436839 atcaattttacctttcatttcacaatcaattcacaattatcattttat 13436886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 91
Target Start/End: Complemental strand, 9530605 - 9530527
Alignment:
Q  13 agactaatttaaaataataatagagtcaaagactaatttaaaaatgagttacaaagacatggatcaatttaatggttta 91  Q
    |||||| ||| ||||| ||||| ||| | |||||||||| | ||||| |||||||||||  || |||||||||||||||    
T  9530605 agactagtttgaaatattaataaagttagagactaatttgagaatgacttacaaagacagagaccaatttaatggttta 9530527  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 71
Target Start/End: Original strand, 3960874 - 3960931
Alignment:
Q  14 gactaatttaaaataataatagagtcaaagactaatttaaaaatgagttacaaagaca 71  Q
    ||||||||||||||| ||||||||||| |||||| ||| | ||| | |||||||||||    
T  3960874 gactaatttaaaatattaatagagtcatagactagtttgataataacttacaaagaca 3960931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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