View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5489-Insertion-6 (Length: 756)
Name: NF5489-Insertion-6
Description: NF5489
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5489-Insertion-6 |
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Alignment Details
Target: chr4 (Bit Score: 415; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 8 - 541
Target Start/End: Complemental strand, 36167706 - 36167184
Alignment:
| Q |
8 |
gctcataaccccgccgttagcttctctcttttccaattt-gtggaccctggataataaacatgcatgctaaatttattatcaatctaatcattttcttca |
106 |
Q |
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| T |
36167706 |
gctcataaccccgccgttagcttctctcttttccaattttgtggaccctggataataaacatgc----taaatttattatcaatctaatcattttcttca |
36167611 |
T |
|
| Q |
107 |
taccaa-cagttaaaaatttaaacgtgacaaataacggaaagagtacaatttcaaatcaaattaaactaaccaacattctatttagagtttagttttcat |
205 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36167610 |
taccaaacagttaaaaatttaaacgtgacaaataacggaaagagtacattttcaaatcaaattaaactaaccaacattctatttagagtttagttttcat |
36167511 |
T |
|
| Q |
206 |
acacggttattaaaagaaaattcactcattcagtagcacattgcaatcgatcgtacgtatcaatttattattctttttaacagacagagtaacctacttc |
305 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
36167510 |
acacggttattaaaagaaaattcactcattcagtagaacattgcaatcgatcgtacgtatcaatttattattctttttaacagacagagtaaccaacttc |
36167411 |
T |
|
| Q |
306 |
ttttcatttatagtatatgctacattatatgtaaataatttaagtaaaactttggaggttggccataccaataacttgcaatgaattctaagaatagtaa |
405 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36167410 |
ttttcatttatagtatatgctacattatatgtaaataatttaagtaaaactttggaggttggccataccaataacttgcaatgaattctaagaatagtaa |
36167311 |
T |
|
| Q |
406 |
attttagaatttataatcactcaaagtaaattatgggataaatattgtaacccgcttgactttatgtaaaataaaggggttatctatgttttctatctca |
505 |
Q |
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|||||||||||||||||||||||||||||||||| |||| | |||||||| |||||||||||||||| ||||||| |||||||||||| ||||||||||| |
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| T |
36167310 |
attttagaatttataatcactcaaagtaaattat-ggat-agtattgtaa-ccgcttgactttatgt-aaataaa-gggttatctatg-tttctatctca |
36167217 |
T |
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| Q |
506 |
atttcatatttcatatatccataatttcatctcctt |
541 |
Q |
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| |||||||||||||||| ||||| ||||||||||| |
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| T |
36167216 |
a-ttcatatttcatatat-cataa-ttcatctcctt |
36167184 |
T |
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