View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5489-Insertion-7 (Length: 693)

Name: NF5489-Insertion-7
Description: NF5489
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5489-Insertion-7
NF5489-Insertion-7
[»] chr4 (19 HSPs)
chr4 (8-348)||(39087738-39088078)
chr4 (345-588)||(39086678-39086919)
chr4 (11-233)||(39082199-39082421)
chr4 (26-244)||(39091233-39091451)
chr4 (29-260)||(39070769-39070999)
chr4 (534-680)||(39081890-39082037)
chr4 (17-207)||(39097556-39097746)
chr4 (351-453)||(39082071-39082173)
chr4 (602-691)||(39086296-39086393)
chr4 (168-225)||(39080279-39080336)
chr4 (146-208)||(39075094-39075156)
chr4 (26-79)||(7637054-7637107)
chr4 (29-81)||(7615238-7615290)
chr4 (29-81)||(7656216-7656268)
chr4 (146-221)||(7656327-7656402)
chr4 (26-72)||(7606233-7606279)
chr4 (146-207)||(7615118-7615179)
chr4 (324-393)||(39070664-39070731)
chr4 (299-363)||(39091145-39091209)
[»] scaffold0190 (1 HSPs)
scaffold0190 (30-221)||(4310-4501)
[»] chr8 (2 HSPs)
chr8 (26-109)||(15745017-15745100)
chr8 (146-205)||(34173991-34174050)
[»] chr7 (3 HSPs)
chr7 (29-83)||(8936171-8936225)
chr7 (26-72)||(8941813-8941859)
chr7 (146-207)||(8936282-8936343)


Alignment Details
Target: chr4 (Bit Score: 337; Significance: 0; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 8 - 348
Target Start/End: Complemental strand, 39088078 - 39087738
Alignment:
Q  8 gctaattcattggctacgagtagttctccaaggtttgatgtttatgataatgattttggttgggggaagcctgtaggggttcgaagcgggggtgcgaata 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39088078 gctaattcattggctacgagtagttctccaaggtttgatgtttatgataatgattttggttgggggaagcctgtaggggttcgaagcgggggtgcgaata 39087979  T
Q  108 aaagtaatgggaagattactgtgtttactggagctgacgaaggtagcattgatattgaagtttgtctttcttatgagattttggaggctttgggaaatga 207  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39087978 aaagtaatgggaagattactgtgtttgctggagctgacgaaggtagcattgatattgaagtttgtctttcttatgagattttggaggctttgggaaatga 39087879  T
Q  208 tgctgagttcatggttcctagttctacttaatgtgacttgtaaattttgttataattatcttgtttgacacttgaattacaattcttgttttgagcttgt 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39087878 tgctgagttcatggttcctagttctacttaatgtgacttgtaaattttgttataattatcttgtttgacacttgaattacaattcttgttttgagcttgt 39087779  T
Q  308 tctaatgatgtaatggtgtaactgcatttatgtttattgag 348  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  39087778 tctaatgatgtaatggtgtaactgcatttatgtttattgag 39087738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 345 - 588
Target Start/End: Complemental strand, 39086919 - 39086678
Alignment:
Q  345 tgagttgctatttacattttttctggtctgaaattgtttaggatatgcttgtttgaacaataattaaggatatgtcacattgctgtttcaattatttggt 444  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  39086919 tgagttgctatttacattttttctggtctgaaattgtttaggatatgcttgtttgaacaataattaaggatatgttacattgctgtttcaattatttggt 39086820  T
Q  445 ttctacttgatgacatgttggtctgtaatctgtatctgaacattgtacaaatgaatctagtctttggataatagcttgaacttgaacagaaagcttctac 544  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||| ||||||||||||    
T  39086819 ttctacttgttgacatgttggtctgtaatctgtatctgaacattgtacaaatgaatctagtctttgg---atagcttgaacttgaaccgaaagcttctac 39086723  T
Q  545 caaaaaatatgttc-gagaagttcttcgcaggtacaaattttaat 588  Q
    |||||||||||||| ||||||||||||||||||||||||||||||    
T  39086722 caaaaaatatgttctgagaagttcttcgcaggtacaaattttaat 39086678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 159; E-Value: 3e-84
Query Start/End: Original strand, 11 - 233
Target Start/End: Complemental strand, 39082421 - 39082199
Alignment:
Q  11 aattcattggctacgagtagttctccaaggtttgatgtttatgataatgattttggttgggggaagcctgtaggggttcgaagcgggggtgcgaataaaa 110  Q
    ||||||||||| |||||||||||||  |||||||||||||||| |||||||||||||||||||||||| |||||||||||||| |||||| | |||||||    
T  39082421 aattcattggcgacgagtagttctcagaggtttgatgtttatggtaatgattttggttgggggaagccggtaggggttcgaagtgggggttcaaataaaa 39082322  T
Q  111 gtaatgggaagattactgtgtttactggagctgacgaaggtagcattgatattgaagtttgtctttcttatgagattttggaggctttgggaaatgatgc 210  Q
    ||||||||||||||||||||| | |||||||||| ||||||||||||||||||||||||||||||||||  ||||| |||||||||||||||||||||||    
T  39082321 gtaatgggaagattactgtgtatgctggagctgaagaaggtagcattgatattgaagtttgtctttctttcgagatattggaggctttgggaaatgatgc 39082222  T
Q  211 tgagttcatggttcctagttcta 233  Q
     |||||| |||||||||||||||    
T  39082221 cgagttcttggttcctagttcta 39082199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 26 - 244
Target Start/End: Complemental strand, 39091451 - 39091233
Alignment:
Q  26 agtagttctccaaggtttgatgtttatgataatgattttggttgggggaagcctgtaggggttcgaagcgggggtgcgaataaaagtaatgggaagatta 125  Q
    ||||||||||| |||||||||||||| | ||||||||||||||||||||||||||| |||||| || |||| ||||||||||| | |||||| |||||||    
T  39091451 agtagttctccgaggtttgatgtttacggtaatgattttggttgggggaagcctgtgggggttagatgcggaggtgcgaataagaataatggaaagatta 39091352  T
Q  126 ctgtgtttactggagctgacgaaggtagcattgatattgaagtttgtctttcttatgagattttggaggctttgggaaatgatgctgagttcatggttcc 225  Q
    | |||||| |||| | ||| ||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  39091351 ccgtgtttgctggggttgaagaaggtagcatagatgttgaagtttgtctttcttatgagattttggaggctttgggaaatgatgctgagttcttggttcc 39091252  T
Q  226 tagttctacttaatgtgac 244  Q
    ||||||||  |||||||||    
T  39091251 tagttctaagtaatgtgac 39091233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 29 - 260
Target Start/End: Complemental strand, 39070999 - 39070769
Alignment:
Q  29 agttctccaaggtttgatgtttatgataatgattttggttgggggaagcctgtaggggttcgaagcgggggtgcgaataaaagtaatgggaagattactg 128  Q
    |||||||| ||||||||||||| ||  ||||||||||| ||||| ||||| || | ||||||||| ||| |||  ||||| | |||||| || |||| ||    
T  39070999 agttctccgaggtttgatgtttttggcaatgattttggctggggaaagccagtggcggttcgaagtgggagtggtaataagaataatggaaaaattagtg 39070900  T
Q  129 tgtttactggagctgacgaaggtagcattgatattgaagtttgtctttcttatgagattttggaggctttgggaaatgatgctgagttcatggttcctag 228  Q
    | ||| |||| ||||| |||||||| || ||| ||||| ||||||||||||||||||||||||||||||||| |||||||| ||||||| ||||||| |     
T  39070899 tttttgctggtgctgaagaaggtagtatagatgttgaaatttgtctttcttatgagattttggaggctttggcaaatgatgttgagttcttggttccaat 39070800  T
Q  229 ttctacttaatgtgacttgtaaattttgttat 260  Q
    |||||  ||||||||||||| |||||||||||    
T  39070799 ttctaagtaatgtgacttgt-aattttgttat 39070769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 534 - 680
Target Start/End: Complemental strand, 39082037 - 39081890
Alignment:
Q  534 aaagcttctaccaaaa-aatatgttcgagaagttcttcgcaggtacaaattttaatatatgtttgctacttaaaggtaatgtatatcgatgatagtaagt 632  Q
    ||||||||||| |||  |||||||||||||| |||||| ||| ||||| | ||||||||| ||||||| ||||| |||||||||||||||||| ||||||    
T  39082037 aaagcttctactaaagtaatatgttcgagaacttcttcccagttacaattcttaatatatctttgctatttaaatgtaatgtatatcgatgatggtaagt 39081938  T
Q  633 aagattgaaatctattcaataaatgaaaatataagcagttgagctact 680  Q
    ||||| |||||||||| |||||||||||||||||||||||||||||||    
T  39081937 aagatagaaatctattgaataaatgaaaatataagcagttgagctact 39081890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 17 - 207
Target Start/End: Complemental strand, 39097746 - 39097556
Alignment:
Q  17 ttggctacgagtagttctccaaggtttgatgtttatgataatgattttggttgggggaagcctgtaggggttcgaagcgggggtgcgaataaaagtaatg 116  Q
    ||||| || |||||||||||||||||||||||||||| |||||| ||||||||||| |||||||| |  ||| |||| |||||||| ||||||||| |||    
T  39097746 ttggcaactagtagttctccaaggtttgatgtttatggtaatgactttggttggggtaagcctgttgctgttagaagtgggggtgcaaataaaagtgatg 39097647  T
Q  117 ggaagattactgtgtttactggagctgacgaaggtagcattgatattgaagtttgtctttcttatgagattttggaggctttgggaaatga 207  Q
    | | ||| ||| |||||| |||    || |||||||| |||||| |||||||||| ||||||||||| |||||||||||| ||||||||||    
T  39097646 gaacgataactatgtttagtgggatagaagaaggtagtattgatgttgaagtttgcctttcttatgatattttggaggctatgggaaatga 39097556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 351 - 453
Target Start/End: Complemental strand, 39082173 - 39082071
Alignment:
Q  351 gctatttacattttttctggtctgaaattgtttaggatatgcttgtttgaacaataattaaggatatgtcacattgctgtttcaattatttggtttctac 450  Q
    |||||||||| ||||||||||||||||||||||||||||||||||  ||||||||| ||||||||||||||| |||||||||||||||||||||| ||||    
T  39082173 gctatttacaatttttctggtctgaaattgtttaggatatgcttgggtgaacaatatttaaggatatgtcactttgctgtttcaattatttggttactac 39082074  T
Q  451 ttg 453  Q
    |||    
T  39082073 ttg 39082071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 602 - 691
Target Start/End: Complemental strand, 39086393 - 39086296
Alignment:
Q  602 ttaaaggtaatgtatatcgatgatagtaagtaa--------gattgaaatctattcaataaatgaaaatataagcagttgagctactagcccaaacca 691  Q
    |||||||||||||||||||||||| ||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39086393 ttaaaggtaatgtatatcgatgatggtaagtaattaagtaagattgaaatctattcaataaatgaaaatataagcagttgagctactagcccaaacca 39086296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 168 - 225
Target Start/End: Complemental strand, 39080336 - 39080279
Alignment:
Q  168 tttgtctttcttatgagattttggaggctttgggaaatgatgctgagttcatggttcc 225  Q
    |||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||    
T  39080336 tttgtctttcttatgaaattttggaggctttgggaaatgatactgagttcatggttcc 39080279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 146 - 208
Target Start/End: Complemental strand, 39075156 - 39075094
Alignment:
Q  146 gaaggtagcattgatattgaagtttgtctttcttatgagattttggaggctttgggaaatgat 208  Q
    ||||||||  |||||||| ||||||||||| ||||||| |||||||||||| |||||||||||    
T  39075156 gaaggtagtgttgatattcaagtttgtcttccttatgatattttggaggctatgggaaatgat 39075094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 26 - 79
Target Start/End: Complemental strand, 7637107 - 7637054
Alignment:
Q  26 agtagttctccaaggtttgatgtttatgataatgattttggttgggggaagcct 79  Q
    |||||||||||| ||||||||||||||| |||||||||||| ||||| ||||||    
T  7637107 agtagttctccatggtttgatgtttatggtaatgattttggatggggaaagcct 7637054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 81
Target Start/End: Complemental strand, 7615290 - 7615238
Alignment:
Q  29 agttctccaaggtttgatgtttatgataatgattttggttgggggaagcctgt 81  Q
    ||||||||  ||||||||||||||| |||||||||||||||||| ||||||||    
T  7615290 agttctccgtggtttgatgtttatggtaatgattttggttggggaaagcctgt 7615238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 81
Target Start/End: Original strand, 7656216 - 7656268
Alignment:
Q  29 agttctccaaggtttgatgtttatgataatgattttggttgggggaagcctgt 81  Q
    |||||||||| |||||||||||||| |||||||||||| ||||| ||||||||    
T  7656216 agttctccaaagtttgatgtttatggtaatgattttggatggggaaagcctgt 7656268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 221
Target Start/End: Original strand, 7656327 - 7656402
Alignment:
Q  146 gaaggtagcattgatattgaagtttgtctttcttatgagattttggaggctttgggaaatgatgctgagttcatgg 221  Q
    |||| |||||||||  || |||| |||||| ||||  |||||||||||||  ||||||||||| ||||||||||||    
T  7656327 gaagctagcattgaccttcaagtgtgtcttccttacaagattttggaggcaatgggaaatgatcctgagttcatgg 7656402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 26 - 72
Target Start/End: Complemental strand, 7606279 - 7606233
Alignment:
Q  26 agtagttctccaaggtttgatgtttatgataatgattttggttgggg 72  Q
    |||||||||||| ||||||||||||||| ||||||||| || |||||    
T  7606279 agtagttctccatggtttgatgtttatggtaatgatttcggatgggg 7606233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 146 - 207
Target Start/End: Complemental strand, 7615179 - 7615118
Alignment:
Q  146 gaaggtagcattgatattgaagtttgtctttcttatgagattttggaggctttgggaaatga 207  Q
    |||||||| || ||| || |||||||||||||  ||||||||||||||||  ||||||||||    
T  7615179 gaaggtagtatagatcttcaagtttgtctttcacatgagattttggaggcaatgggaaatga 7615118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 324 - 393
Target Start/End: Complemental strand, 39070731 - 39070664
Alignment:
Q  324 tgtaactgcatttatgtttattgagttgctatttacattttttctggtctgaaattgtttaggatatgct 393  Q
    ||||||||||||| |||||| | ||||||| ||||||||| | ||||| |||| ||||||||||||||||    
T  39070731 tgtaactgcattt-tgtttaataagttgctttttacatttat-ctggtatgaacttgtttaggatatgct 39070664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 299 - 363
Target Start/End: Complemental strand, 39091209 - 39091145
Alignment:
Q  299 tgagcttgttctaatgatgtaatggtgtaactgcatttatgtttattgagttgctatttacattt 363  Q
    |||| ||||| |||| |||||||| |||||||  ||||||||||| | |||| ||||||||||||    
T  39091209 tgagattgttgtaattatgtaatgatgtaacttaatttatgtttaataagtttctatttacattt 39091145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0190 (Bit Score: 56; Significance: 8e-23; HSPs: 1)
Name: scaffold0190
Description:

Target: scaffold0190; HSP #1
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 30 - 221
Target Start/End: Complemental strand, 4501 - 4310
Alignment:
Q  30 gttctccaaggtttgatgtttatgataatgattttggttgggggaagcctgtaggggttcgaagcgggggtgcgaataaaagtaatgggaagattactgt 129  Q
    |||||||  ||||||||||||||| |||||||||||||||||| || ||||| ||||||||||| |||||| | |||||||| ||||| ||||||  |||    
T  4501 gttctccttggtttgatgtttatggtaatgattttggttggggaaaacctgtgggggttcgaagtgggggttcaaataaaagaaatggaaagatttatgt 4402  T
Q  130 gtttactggagctgacgaaggtagcattgatattgaagtttgtctttcttatgagattttggaggctttgggaaatgatgctgagttcatgg 221  Q
    || | | || |  || || |||||||| ||  ||||||| |||||| ||| ||| |||||||||||  |  |||||||| ||||||| ||||    
T  4401 gtatgcaggtgtagaagatggtagcatggaccttgaagtatgtcttccttgtgaaattttggaggcaattagaaatgatcctgagtttatgg 4310  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 26 - 109
Target Start/End: Original strand, 15745017 - 15745100
Alignment:
Q  26 agtagttctccaaggtttgatgtttatgataatgattttggttgggggaagcctgtaggggttcgaagcgggggtgcgaataaa 109  Q
    |||||||| ||  |||||||||||||||  ||||||||||||||||| || ||||| ||||||||||  |||||||| ||||||    
T  15745017 agtagttcaccctggtttgatgtttatggcaatgattttggttggggaaaacctgtgggggttcgaactgggggtgcaaataaa 15745100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 146 - 205
Target Start/End: Complemental strand, 34174050 - 34173991
Alignment:
Q  146 gaaggtagcattgatattgaagtttgtctttcttatgagattttggaggctttgggaaat 205  Q
    |||||||| ||||||||| ||||||||||| ||||||| |||||||||||| | ||||||    
T  34174050 gaaggtagtattgatattcaagtttgtcttccttatgatattttggaggctattggaaat 34173991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 29 - 83
Target Start/End: Original strand, 8936171 - 8936225
Alignment:
Q  29 agttctccaaggtttgatgtttatgataatgattttggttgggggaagcctgtag 83  Q
    ||||||||  ||||||||||||||| |||||||||||| ||||| ||||||||||    
T  8936171 agttctccgtggtttgatgtttatggtaatgattttggatggggaaagcctgtag 8936225  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 26 - 72
Target Start/End: Original strand, 8941813 - 8941859
Alignment:
Q  26 agtagttctccaaggtttgatgtttatgataatgattttggttgggg 72  Q
    |||||||||||| ||||||||||||||| ||||||||| || |||||    
T  8941813 agtagttctccatggtttgatgtttatggtaatgatttcggatgggg 8941859  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 146 - 207
Target Start/End: Original strand, 8936282 - 8936343
Alignment:
Q  146 gaaggtagcattgatattgaagtttgtctttcttatgagattttggaggctttgggaaatga 207  Q
    |||||||| |||||  || ||||||||||| | |||||||||||||||||  ||||||||||    
T  8936282 gaaggtagtattgaccttcaagtttgtcttccatatgagattttggaggcaatgggaaatga 8936343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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