View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5489_high_12 (Length: 459)
Name: NF5489_high_12
Description: NF5489
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5489_high_12 |
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Alignment Details
Target: chr8 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 18 - 447
Target Start/End: Complemental strand, 36785043 - 36784614
Alignment:
| Q |
18 |
catacaatgtgtcttggtaaccataaattccacaatcaaagaatgccgaacgatcaccttccacttgaagtgccactgatgggccagcttcatggcccgc |
117 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
36785043 |
catacaatgtgtcttgataaccataaattccacaatcaaagaatgccgaacgatcaccttccacttgaagtgccactgatgggccagcttcatgacccgc |
36784944 |
T |
|
| Q |
118 |
agtgttttcaaatgtaattgactttgcaatgaaatctttagcaaggttggctgcaatttttgatcaagatcacaaaattcacttcaataagagatatata |
217 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36784943 |
agtgttttcaaatgtaattgacttcgcaatgaaatctttagcaaggttggctgcaatttttgatcaagatcacaaaattcacttcaataagagatatata |
36784844 |
T |
|
| Q |
218 |
tttcatattttgtaattcactattttgcgttaaatgtttagttgcaagattattctttttgtccctcttctaccctaattaatatgataactctacttat |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36784843 |
tttcatattttgtaattcactattttgcgttaaatgtttagttgcaagattattctttttgtccctcttctaccctaattaatatgataactctacttat |
36784744 |
T |
|
| Q |
318 |
gatcnnnnnnngttttaaatatgtggtagnnnnnnnnnncttcgggaattgaaaattaaaaagaatgagagtgttgggtgattagaacaatcaactaatt |
417 |
Q |
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|||| |||||||||||||||||| |||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
36784743 |
gatcaaaaaaagttttaaatatgtggtagttttttttttcttcgggaattgcaaattaaaaagaatgagagtgttgggggattagaacaatcaactaatt |
36784644 |
T |
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| Q |
418 |
ttagttaagagttaaaatgttggaggcctt |
447 |
Q |
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| T |
36784643 |
ttagttaagagttaaaatgttggacgcctt |
36784614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 76 - 163
Target Start/End: Complemental strand, 40525078 - 40524991
Alignment:
| Q |
76 |
ttccacttgaagtgccactgatgggccagcttcatggcccgcagtgttttcaaatgtaattgactttgcaatgaaatctttagcaagg |
163 |
Q |
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|||||| ||||||||||| ||| ||| || |||||| || | ||||||| ||||||||||| || ||||||||||||||| ||||| |
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| T |
40525078 |
ttccacgtgaagtgccaccgataggctagtttcatgaccaacggtgttttggaatgtaattgatttggcaatgaaatctttaccaagg |
40524991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 50
Target Start/End: Complemental strand, 40525106 - 40525073
Alignment:
| Q |
17 |
acatacaatgtgtcttggtaaccataaattccac |
50 |
Q |
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||||||||||||||||||||||||| |||||||| |
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| T |
40525106 |
acatacaatgtgtcttggtaaccatgaattccac |
40525073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 50
Target Start/End: Original strand, 51546855 - 51546888
Alignment:
| Q |
17 |
acatacaatgtgtcttggtaaccataaattccac |
50 |
Q |
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||||||||||||||||||||||||| |||||||| |
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|
| T |
51546855 |
acatacaatgtgtcttggtaaccatgaattccac |
51546888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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