View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5489_high_16 (Length: 386)
Name: NF5489_high_16
Description: NF5489
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5489_high_16 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 17 - 376
Target Start/End: Complemental strand, 10066898 - 10066539
Alignment:
| Q |
17 |
ataatatatttctacaataaagaatgaatagttgacgcattgcatatgttgattttgtaagcttcttaaaagcttatgaagataagcttaaaacaacctt |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10066898 |
ataatatatttctacaataaagaatgaatagttgacgcattgcatatgttgattttgtaagcttcttaaaagcttatgaagataagcttaaaacaacctt |
10066799 |
T |
|
| Q |
117 |
aggacaaattagaagctattttcgtaagttcctccaaacatttgtataagttttaagtcataagctcttccaaatgcagccttaactttattcgcaatgt |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10066798 |
aggacaaattagaagctattttcgtaagttcctccaatcatttgtataagttttaagtcataagctcttccaaatgcagccttaactttattcgcaatgt |
10066699 |
T |
|
| Q |
217 |
ttcgatggactaaccactatttaatattttgtgccatcttatcaaggaaaacttagttcaatctatttaaaagtcaaattttgttgttatttgcagttct |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10066698 |
ttcgatggactaaccactatttaatattttgtgacatcttatcaaggaaaacttagttcaatctatttaaaagtcaaattttgttgttatttgcagttct |
10066599 |
T |
|
| Q |
317 |
gttgggcagaacctgaagacaagcacttatattggggagataatctttgccatattcatc |
376 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10066598 |
gttgggcagaacctgaagacaagcacttatattggggagataatctttgccatattcatc |
10066539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University