View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5489_high_2 (Length: 686)
Name: NF5489_high_2
Description: NF5489
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5489_high_2 |
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Alignment Details
Target: chr6 (Bit Score: 524; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 524; E-Value: 0
Query Start/End: Original strand, 32 - 667
Target Start/End: Original strand, 6169654 - 6170283
Alignment:
| Q |
32 |
cgtagttgattgtttttataaatagagagttcaagccctatagaataaaattggagatgcatgcgtaagaaaacaaaagtttgtattnnnnnnnnnnnng |
131 |
Q |
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| T |
6169654 |
cgtatttgattgtttttataaatagagagttcaagccctatagaataaaattggagatgcatgcgtaagaatacaaaagtttgtattaaaaaaaaat--g |
6169751 |
T |
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| Q |
132 |
gaatttgttttttgaggataaacatagaaaacattacaaaatttggaaggtttattggaacaatgggatgaagttgctgctgctattattatttacaaac |
231 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6169752 |
gaatttgttttttgaggataaacatagaaaacattacaaaatttggaaggtttattggaacaatgggatgaagttgctgctgctattattatttacaaac |
6169851 |
T |
|
| Q |
232 |
ataggattttctgcaatgtcaatagcctcatttgtcccgttggtgttttcaaatcgaccaacgtaacgtgtacactttcatccattcgtcgacaactttt |
331 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| |
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| T |
6169852 |
ataggattttctgcaatgtcaatagcttcatttgtcccgttggtgttttcaaatcgaccaatgtaacgtgtacactttcatgcattcgtcgacaactttt |
6169951 |
T |
|
| Q |
332 |
gttccaaaaaaggatgagggtttctactactaatctctacatgatcactcgcactggtcatgcttcattcatcaactctcaaggaatttccatcgatgaa |
431 |
Q |
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| T |
6169952 |
gttccaaaaaaggatgagggttt---ctactaatctctacatgatcactcgcactggtcatgcttcattcatcaactctcaaggaatttccatcgatgaa |
6170048 |
T |
|
| Q |
432 |
taattcatttatcaatacttgatcaccaatattcnnnnnnncaacatcaccaacaacaatctcaaagatcgatatcttttggcggttaccacttcgaact |
531 |
Q |
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| T |
6170049 |
taatccatttatcaatacttgatcaccaatattcaaaaaaacaacatcaccaacaacaatctcaaagatcgatatcttttggcagttaccacttcgaact |
6170148 |
T |
|
| Q |
532 |
taatcattttgaataacattgctaattgaaacaatttatcaaattgtctgtgtttataattaatttggtagggagtatatttgaatagaaaataaaaaca |
631 |
Q |
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| T |
6170149 |
taatcattttg-ataacattgctaattgaaacaatttatcaaattgtctgtgtttataattaatttggtagggagtatatttgaatagaaaataaaaaca |
6170247 |
T |
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| Q |
632 |
tgataggtgtttataatcaaggacaaagggagtaat |
667 |
Q |
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| T |
6170248 |
tgataggtgtttataatcaaggacaaagggagtaat |
6170283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 364 - 578
Target Start/End: Original strand, 6186927 - 6187142
Alignment:
| Q |
364 |
atctctacatgatcactcgcactggtcatgcttcattcatcaactctcaaggaatttccatcgatgaataattcatttatcaatacttgatcaccaatat |
463 |
Q |
| |
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| T |
6186927 |
atctctacatgatcactctcaccggtcatgctcgattcatcaactctcaacgaatgtccatctacgaacaatccatcagccggtacttgatcaccaatct |
6187026 |
T |
|
| Q |
464 |
tcnnnnnnncaacatcaccaacaacaatctcaaagatcgatatcttttggcggttaccacttcgaacttaatcattttgaataacattgctaa-ttgaaa |
562 |
Q |
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| T |
6187027 |
tcaaacaaacaacatcaccaacaacaatatcaaatatagatacctttagccgacgaccacttcgaaccaaatcaatttgaatgtcattgctaacttgaga |
6187126 |
T |
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| Q |
563 |
caatttatcaaattgt |
578 |
Q |
| |
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| T |
6187127 |
caatttatcaaattgt |
6187142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 6168615 - 6168649
Alignment:
| Q |
1 |
aattgtttttccgacctaaaccgtttgtgatcgta |
35 |
Q |
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| T |
6168615 |
aattgtttttccgacctaaaccgtttgtaatcgta |
6168649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 362 - 578
Target Start/End: Original strand, 4243869 - 4244086
Alignment:
| Q |
362 |
taatctctacatgatcactcgcactggtcatgcttcattcatcaactctcaaggaatttccatcgatgaataattcatttatcaatacttgatcaccaat |
461 |
Q |
| |
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|||||||||||||||| ||| ||| ||||||||| |||||||||||||||| |||| |||||| | ||| ||| ||| ||||||||||||||| |
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| T |
4243869 |
taatctctacatgatcgctctcaccggtcatgctcgattcatcaactctcaacgaatgtccatctacgaacaatccatcggctggtacttgatcaccaat |
4243968 |
T |
|
| Q |
462 |
attcnnnnnnncaacatcaccaacaacaatctcaaagatcgatatcttttggcggttaccacttcgaacttaatcattttgaataacattgct-aattga |
560 |
Q |
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| T |
4243969 |
cttcaaacaaacaacatcaccaacaacaatatcgaatattgataccttttgtcggcgcccactacgaaccaaatcaatttgaatatcattgctcacttga |
4244068 |
T |
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| Q |
561 |
aacaatttatcaaattgt |
578 |
Q |
| |
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||||||||||||||||| |
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| T |
4244069 |
gacaatttatcaaattgt |
4244086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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