View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5489_high_21 (Length: 305)

Name: NF5489_high_21
Description: NF5489
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5489_high_21
NF5489_high_21
[»] chr3 (1 HSPs)
chr3 (13-305)||(30722915-30723207)


Alignment Details
Target: chr3 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 13 - 305
Target Start/End: Original strand, 30722915 - 30723207
Alignment:
Q  13 aaaataaaagatcaagaattattgaaaattaggaagagaaaatatattgttttgacttttgagttagatcaaaacaacataatattgtttctatatatat 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30722915 aaaataaaagatcaagaattattgaaaattaggaagagaaaatatattgttttgacttttgagttagatcaaaacaacataatattgtttctatatatat 30723014  T
Q  113 cagcaaactagaaagagcatgaagtcaacacagctatatatttcatcaaatcaaatcaaatttctttatttagaaaggttgaaaataagatacttatgac 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  30723015 cagcaaactagaaagagcatgaagtcaacacagctatatatttcatcaaatcaaatcaaatttctttatttagaaaggttgaaaataagatacttatggc 30723114  T
Q  213 gtccccgtgtattctggagcaacggtcggtgtcacaataataatggataataaggtgactataaattaaactgcactatatttaagttgctac 305  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30723115 gtccccgtgtattctggagcaacggtcggtgtcacaataataatggataataaggtgactataaattaaactgcactatatttaagttgctac 30723207  T

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