View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5489_high_31 (Length: 243)

Name: NF5489_high_31
Description: NF5489
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5489_high_31
NF5489_high_31
[»] chr2 (3 HSPs)
chr2 (17-223)||(39090843-39091047)
chr2 (61-106)||(39068709-39068754)
chr2 (49-114)||(44488003-44488068)
[»] chr3 (2 HSPs)
chr3 (62-104)||(47039443-47039485)
chr3 (65-106)||(52119395-52119436)
[»] chr1 (4 HSPs)
chr1 (61-106)||(19262908-19262953)
chr1 (61-104)||(5031157-5031200)
chr1 (65-104)||(12500942-12500981)
chr1 (61-106)||(26329123-26329168)
[»] chr5 (4 HSPs)
chr5 (56-104)||(16752505-16752553)
chr5 (66-104)||(29554882-29554920)
chr5 (65-106)||(22901978-22902019)
chr5 (68-104)||(6237722-6237758)
[»] chr7 (3 HSPs)
chr7 (61-104)||(42336085-42336128)
chr7 (61-106)||(39926539-39926584)
chr7 (61-106)||(45200208-45200253)
[»] chr8 (6 HSPs)
chr8 (65-106)||(9635054-9635095)
chr8 (65-106)||(20275190-20275231)
chr8 (65-106)||(21061817-21061858)
chr8 (57-106)||(23159452-23159501)
chr8 (57-89)||(33763826-33763858)
chr8 (69-101)||(35700401-35700433)
[»] chr4 (2 HSPs)
chr4 (57-89)||(29910472-29910504)
chr4 (57-89)||(49952689-49952721)


Alignment Details
Target: chr2 (Bit Score: 135; Significance: 2e-70; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 17 - 223
Target Start/End: Original strand, 39090843 - 39091047
Alignment:
Q  17 ttctactttctgcacctaagaatgtgaatgatagtttacttcaattgataaggacaatgcataatacatgcaaaattcggggttcgaaccacatccacnn 116  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| |||||| |||||||| |||||||      
T  39090843 ttctactttctacacctaagaatgtgaatgatagtttacttcaattgataaagacaatgcataatatatgcaaagttcgggattcgaaccccatccacaa 39090942  T
Q  117 nnnnnnncatgttaatgatcaattatacaaaatgagaataacattattttgaacaaactcaaaggttagacggtaaatatggaaagaatacttcctcaaa 216  Q
           |||||||||||||||||||  |||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  39090943 aaaaa--catgttaatgatcaattatgaaaaacgagaataacattattttgaacaaactcaaaggttagacagtaaatatggaaagaatacttcctcaaa 39091040  T
Q  217 tgatcat 223  Q
    |||||||    
T  39091041 tgatcat 39091047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 61 - 106
Target Start/End: Complemental strand, 39068754 - 39068709
Alignment:
Q  61 ttgataaggacaatgcataatacatgcaaaattcggggttcgaacc 106  Q
    |||||||||||||||||||||| |||||| || ||||||| |||||    
T  39068754 ttgataaggacaatgcataatatatgcaagatccggggtttgaacc 39068709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 49 - 114
Target Start/End: Complemental strand, 44488068 - 44488003
Alignment:
Q  49 agtttacttcaattgataaggacaatgcataatacatgcaaaattcggggttcgaaccacatccac 114  Q
    |||||| |||| ||| |||||||||||||||||| ||| ||  ||||| |||| ||||||||||||    
T  44488068 agtttagttcagttggtaaggacaatgcataatatatgtaaggttcggagttcaaaccacatccac 44488003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 62 - 104
Target Start/End: Original strand, 47039443 - 47039485
Alignment:
Q  62 tgataaggacaatgcataatacatgcaaaattcggggttcgaa 104  Q
    ||||||||||||||||||||| ||||||| |||||||||||||    
T  47039443 tgataaggacaatgcataatatatgcaaagttcggggttcgaa 47039485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 65 - 106
Target Start/End: Original strand, 52119395 - 52119436
Alignment:
Q  65 taaggacaatgcataatacatgcaaaattcggggttcgaacc 106  Q
    |||||||||||||||||| ||||||  |||||||||||||||    
T  52119395 taaggacaatgcataatatatgcaaggttcggggttcgaacc 52119436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 61 - 106
Target Start/End: Complemental strand, 19262953 - 19262908
Alignment:
Q  61 ttgataaggacaatgcataatacatgcaaaattcggggttcgaacc 106  Q
    |||||||||||||||||||| | ||||||| |||||||||||||||    
T  19262953 ttgataaggacaatgcataacatatgcaaagttcggggttcgaacc 19262908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 61 - 104
Target Start/End: Complemental strand, 5031200 - 5031157
Alignment:
Q  61 ttgataaggacaatgcataatacatgcaaaattcggggttcgaa 104  Q
    |||||||||||||||||||||| || |||| |||||||||||||    
T  5031200 ttgataaggacaatgcataatatatacaaagttcggggttcgaa 5031157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 65 - 104
Target Start/End: Original strand, 12500942 - 12500981
Alignment:
Q  65 taaggacaatgcataatacatgcaaaattcggggttcgaa 104  Q
    |||||||||||||||||| ||||||| |||||||||||||    
T  12500942 taaggacaatgcataatatatgcaaagttcggggttcgaa 12500981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 61 - 106
Target Start/End: Complemental strand, 26329168 - 26329123
Alignment:
Q  61 ttgataaggacaatgcataatacatgcaaaattcggggttcgaacc 106  Q
    |||||||| ||||||||||||||||||||  ||||| |||||||||    
T  26329168 ttgataagaacaatgcataatacatgcaaggttcggagttcgaacc 26329123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 104
Target Start/End: Complemental strand, 16752553 - 16752505
Alignment:
Q  56 ttcaattgataaggacaatgcataatacatgcaaaattcggggttcgaa 104  Q
    |||| ||| |||||||||||||||||| |||||| ||||||||||||||    
T  16752553 ttcagttggtaaggacaatgcataatatatgcaagattcggggttcgaa 16752505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 104
Target Start/End: Original strand, 29554882 - 29554920
Alignment:
Q  66 aaggacaatgcataatacatgcaaaattcggggttcgaa 104  Q
    ||||||||||||||||||||||||  |||||||||||||    
T  29554882 aaggacaatgcataatacatgcaaggttcggggttcgaa 29554920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 65 - 106
Target Start/End: Original strand, 22901978 - 22902019
Alignment:
Q  65 taaggacaatgcataatacatgcaaaattcggggttcgaacc 106  Q
    |||||||||||||||||| ||||||| |||||| ||||||||    
T  22901978 taaggacaatgcataatatatgcaaagttcgggattcgaacc 22902019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 104
Target Start/End: Complemental strand, 6237758 - 6237722
Alignment:
Q  68 ggacaatgcataatacatgcaaaattcggggttcgaa 104  Q
    ||||||||||||||| |||||| ||||||||||||||    
T  6237758 ggacaatgcataatatatgcaagattcggggttcgaa 6237722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 61 - 104
Target Start/End: Original strand, 42336085 - 42336128
Alignment:
Q  61 ttgataaggacaatgcataatacatgcaaaattcggggttcgaa 104  Q
    |||||||||||||||||||||||||||||  | |||||||||||    
T  42336085 ttgataaggacaatgcataatacatgcaaggtccggggttcgaa 42336128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 61 - 106
Target Start/End: Complemental strand, 39926584 - 39926539
Alignment:
Q  61 ttgataaggacaatgcataatacatgcaaaattcggggttcgaacc 106  Q
    |||||||||||||||||||||| ||||||  |||||||||| ||||    
T  39926584 ttgataaggacaatgcataatatatgcaatgttcggggttcaaacc 39926539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 61 - 106
Target Start/End: Original strand, 45200208 - 45200253
Alignment:
Q  61 ttgataaggacaatgcataatacatgcaaaattcggggttcgaacc 106  Q
    |||||| |||||||||||||||||||||||||  || |||||||||    
T  45200208 ttgatatggacaatgcataatacatgcaaaatctggagttcgaacc 45200253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 65 - 106
Target Start/End: Complemental strand, 9635095 - 9635054
Alignment:
Q  65 taaggacaatgcataatacatgcaaaattcggggttcgaacc 106  Q
    |||||| ||||||||||||||||||  |||||||||||||||    
T  9635095 taaggataatgcataatacatgcaaggttcggggttcgaacc 9635054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 65 - 106
Target Start/End: Complemental strand, 20275231 - 20275190
Alignment:
Q  65 taaggacaatgcataatacatgcaaaattcggggttcgaacc 106  Q
    |||||||||||||||||||||||||  |||||||||| ||||    
T  20275231 taaggacaatgcataatacatgcaaggttcggggttcaaacc 20275190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 65 - 106
Target Start/End: Complemental strand, 21061858 - 21061817
Alignment:
Q  65 taaggacaatgcataatacatgcaaaattcggggttcgaacc 106  Q
    |||||||||||||||||||||||||  |||||||||| ||||    
T  21061858 taaggacaatgcataatacatgcaaggttcggggttcaaacc 21061817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 57 - 106
Target Start/End: Original strand, 23159452 - 23159501
Alignment:
Q  57 tcaattgataaggacaatgcataatacatgcaaaattcggggttcgaacc 106  Q
    |||||| ||| ||||||||||||||| |||||| ||||||||||| ||||    
T  23159452 tcaattcatatggacaatgcataatatatgcaagattcggggttcaaacc 23159501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 89
Target Start/End: Original strand, 33763826 - 33763858
Alignment:
Q  57 tcaattgataaggacaatgcataatacatgcaa 89  Q
    |||||||||||||||||||||||||| ||||||    
T  33763826 tcaattgataaggacaatgcataatatatgcaa 33763858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 101
Target Start/End: Complemental strand, 35700433 - 35700401
Alignment:
Q  69 gacaatgcataatacatgcaaaattcggggttc 101  Q
    |||||||||||||| ||||||||||||||||||    
T  35700433 gacaatgcataatatatgcaaaattcggggttc 35700401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 89
Target Start/End: Original strand, 29910472 - 29910504
Alignment:
Q  57 tcaattgataaggacaatgcataatacatgcaa 89  Q
    |||||||||||||||||||||||||| ||||||    
T  29910472 tcaattgataaggacaatgcataatatatgcaa 29910504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 89
Target Start/End: Complemental strand, 49952721 - 49952689
Alignment:
Q  57 tcaattgataaggacaatgcataatacatgcaa 89  Q
    |||||||||||||||||||||||||| ||||||    
T  49952721 tcaattgataaggacaatgcataatatatgcaa 49952689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University