View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5489_high_34 (Length: 241)
Name: NF5489_high_34
Description: NF5489
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5489_high_34 |
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Alignment Details
Target: chr8 (Bit Score: 147; Significance: 1e-77; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 37243178 - 37243401
Alignment:
| Q |
1 |
ctaaattttgaactcgcaccttttaagcgatcatttgatatgaggatcaacacgtagcagaagttcaatttcgtccaagatttgtttgaagaatattaag |
100 |
Q |
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| T |
37243178 |
ctaaattttgaactcgcacctttcaagcgatcatttgatatgaggatcaacacgtagcagaagttcaatttcgtccaagatttgtttgaagaatattaag |
37243277 |
T |
|
| Q |
101 |
actgagaaggattgataaggatctatgaaacatggagannnnnnnnnnnnnnnnnnncctatgaaacatggatataaacacacactaatgttctttttag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| |||||||||||||||||| |
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| T |
37243278 |
actgagaaggattgataaggatctatgaaacatggagatttttgtttttgtttttttcctatgaaatttggatataaacacgcactaatgttctttttag |
37243377 |
T |
|
| Q |
201 |
tatttactagcattatcatcatat |
224 |
Q |
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| |||||||||||||||||||||| |
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| T |
37243378 |
tgtttactagcattatcatcatat |
37243401 |
T |
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