View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5489_high_4 (Length: 530)

Name: NF5489_high_4
Description: NF5489
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5489_high_4
NF5489_high_4
[»] chr5 (8 HSPs)
chr5 (13-511)||(12888586-12889086)
chr5 (74-279)||(37579102-37579306)
chr5 (138-223)||(34462572-34462657)
chr5 (32-70)||(11942493-11942531)
chr5 (32-70)||(15782796-15782834)
chr5 (32-70)||(17959148-17959186)
chr5 (16-70)||(20387060-20387114)
chr5 (13-70)||(350286-350343)
[»] chr3 (9 HSPs)
chr3 (70-279)||(15912360-15912569)
chr3 (138-223)||(3678027-3678112)
chr3 (138-223)||(20437028-20437113)
chr3 (138-223)||(41434193-41434278)
chr3 (138-223)||(30014598-30014683)
chr3 (16-70)||(4451764-4451818)
chr3 (32-70)||(5949019-5949057)
chr3 (32-70)||(37258926-37258964)
chr3 (32-70)||(46382339-46382377)
[»] scaffold0014 (1 HSPs)
scaffold0014 (74-279)||(185462-185667)
[»] chr1 (3 HSPs)
chr1 (164-279)||(27168547-27168663)
chr1 (13-59)||(1064568-1064614)
chr1 (32-70)||(5627172-5627210)
[»] chr7 (7 HSPs)
chr7 (138-223)||(804605-804690)
chr7 (138-223)||(16293483-16293568)
chr7 (16-70)||(1891634-1891688)
chr7 (138-223)||(3430351-3430436)
chr7 (32-70)||(9471357-9471395)
chr7 (32-70)||(16391493-16391531)
chr7 (32-70)||(30368005-30368043)
[»] chr6 (3 HSPs)
chr6 (13-70)||(27546924-27546981)
chr6 (16-70)||(25708979-25709033)
chr6 (32-70)||(9134470-9134508)
[»] scaffold0031 (1 HSPs)
scaffold0031 (16-70)||(16568-16622)
[»] chr2 (3 HSPs)
chr2 (16-70)||(26722439-26722493)
chr2 (13-70)||(34532606-34532663)
chr2 (32-70)||(12385703-12385741)
[»] chr4 (1 HSPs)
chr4 (13-70)||(1880273-1880330)
[»] scaffold0029 (1 HSPs)
scaffold0029 (32-70)||(31214-31252)
[»] chr8 (1 HSPs)
chr8 (16-70)||(16770350-16770404)


Alignment Details
Target: chr5 (Bit Score: 417; Significance: 0; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 13 - 511
Target Start/End: Complemental strand, 12889086 - 12888586
Alignment:
Q  13 aaaatgatgaaggagctgggtgatgatttcaagattgagcatcataactcttcaccttggctgcgtgcttaggagcaggctcaaggccgttgaaaggttc 112  Q
    |||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||    
T  12889086 aaaatgatgaagaagctgtgtgatgatttcaagattgagcatcataactcttcaccttggctgcgtgcttaggagcgggctcaatgccgttgaaaggttc 12888987  T
Q  113 tttgtcagacaccggtaaaccgatcaagtaggagtattcctcaagggtgatgacaagttggtagtcgaggaaagtgaaacaatggcaataagagtcataa 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||    
T  12888986 tttgtcagacaccggtaaaccgatcaagtaggagtattcctcaagggtgaggacaagttggtagtcgaggaaagtgaaacgatggcaataagagtcataa 12888887  T
Q  213 aattggaccaaagtatcgaggatcccttgtaccaccttcatctcgaggaggttaagtagtcttccatttttcaaaaatcacctcaatttttcaggttcta 312  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  12888886 aattggaccaaagtatcgaggatcccttgtaccaccttcatctggaggaggttaagtagtctttcatttttcaaaaatcacctcaatttttcaggttcta 12888787  T
Q  313 tattatcttacccgtgttaatttatttatttttaccgatcttattttatgttcattagttgatgtaaaaataaaggtgattatttatctctctcgttgta 412  Q
    || |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  12888786 taatatcttacccgtgttaatttatttatttttaccgatcttattctatgttcattagttgaagtaaaaataaaggtgattatttatctctctcgttgta 12888687  T
Q  413 ttcttaaatctgttaaaatatactgtcgtaa--nnnnnnngctgaatcaaaagcaaaggacagcattaggagggaacttgacatcccaagagcaccccat 510  Q
    |||||||||||||||||||||||||||||||         ||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||    
T  12888686 ttcttaaatctgttaaaatatactgtcgtaatttttttttgctgaatcaaaagcaaaggacggcattaggagggaacttgacatcccacgagcaccccat 12888587  T
Q  511 c 511  Q
    |    
T  12888586 c 12888586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 74 - 279
Target Start/End: Complemental strand, 37579306 - 37579102
Alignment:
Q  74 tgcgtgcttaggagcaggctcaaggccgttgaaaggttctttgtcagacaccggtaaaccgatcaagtaggagtattcctcaagggtgatgacaagttgg 173  Q
    ||||||||||||| ||||||||||||||||||| ||||||| || |||||| | ||| ||||||||||||||||||||||||||||||  ||||||||||    
T  37579306 tgcgtgcttaggaacaggctcaaggccgttgaatggttcttcgttagacactg-taacccgatcaagtaggagtattcctcaagggtggggacaagttgg 37579208  T
Q  174 tagtcgaggaaagtgaaacaatggcaataagagtcataaaattggaccaaagtatcgaggatcccttgtaccaccttcatctcgaggaggttaagtagtc 273  Q
    ||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| ||||||||| |||||||||||||||| ||||    
T  37579207 tagtcgaggaaagtgaaacaatggcaataagggtcataaaactggaccaaagtatcgaggatcccttgcaccaccttcgtctcgaggaggttaagcagtc 37579108  T
Q  274 ttccat 279  Q
    ||||||    
T  37579107 ttccat 37579102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 138 - 223
Target Start/End: Complemental strand, 34462657 - 34462572
Alignment:
Q  138 aagtaggagtattcctcaagggtgatgacaagttggtagtcgaggaaagtgaaacaatggcaataagagtcataaaattggaccaa 223  Q
    ||||||||||||||||| ||||||    |||||||||||||| ||||||| ||||||||| ||  || |||||| |||||||||||    
T  34462657 aagtaggagtattcctcgagggtgggagcaagttggtagtcggggaaagtaaaacaatggtaagcagggtcatagaattggaccaa 34462572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 32 - 70
Target Start/End: Complemental strand, 11942531 - 11942493
Alignment:
Q  32 gtgatgatttcaagattgagcatcataactcttcacctt 70  Q
    |||||||||||||||| ||||| ||||||||||||||||    
T  11942531 gtgatgatttcaagatcgagcaccataactcttcacctt 11942493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 32 - 70
Target Start/End: Complemental strand, 15782834 - 15782796
Alignment:
Q  32 gtgatgatttcaagattgagcatcataactcttcacctt 70  Q
    |||||||||||||||| ||||| ||||||||||||||||    
T  15782834 gtgatgatttcaagatcgagcaccataactcttcacctt 15782796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 32 - 70
Target Start/End: Original strand, 17959148 - 17959186
Alignment:
Q  32 gtgatgatttcaagattgagcatcataactcttcacctt 70  Q
    |||||||||||||||| ||||| ||||||||||||||||    
T  17959148 gtgatgatttcaagatcgagcaccataactcttcacctt 17959186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 16 - 70
Target Start/End: Complemental strand, 20387114 - 20387060
Alignment:
Q  16 atgatgaaggagctgggtgatgatttcaagattgagcatcataactcttcacctt 70  Q
    |||||||||||  |  |||||||||||||||||||||||||||| ||||| ||||    
T  20387114 atgatgaaggaattatgtgatgatttcaagattgagcatcataattcttctcctt 20387060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 70
Target Start/End: Complemental strand, 350343 - 350286
Alignment:
Q  13 aaaatgatgaaggagctgggtgatgatttcaagattgagcatcataactcttcacctt 70  Q
    ||||||||||||||  |  |||||| ||||||||| ||||||||||||||||| ||||    
T  350343 aaaatgatgaaggaattatgtgatggtttcaagatcgagcatcataactcttctcctt 350286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 166; Significance: 1e-88; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 70 - 279
Target Start/End: Complemental strand, 15912569 - 15912360
Alignment:
Q  70 tggctgcgtgcttaggagcaggctcaaggccgttgaaaggttctttgtcagacaccggtaaaccgatcaagtaggagtattcctcaagggtgatgacaag 169  Q
    ||||||||||||||||||| ||||||||||||||||||||||||| || ||||||||||||||||||||| || ||||| ||||||||||||  ||||||    
T  15912569 tggctgcgtgcttaggagcgggctcaaggccgttgaaaggttcttcgttagacaccggtaaaccgatcaaataagagtactcctcaagggtggggacaag 15912470  T
Q  170 ttggtagtcgaggaaagtgaaacaatggcaataagagtcataaaattggaccaaagtatcgaggatcccttgtaccaccttcatctcgaggaggttaagt 269  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||    
T  15912469 ttggtagtcgatgaaagtgaaacaatggcaataagagtcataaaattggaccaaagtatcgaggatcccttgtaccaccttcatttcgaggagattaagt 15912370  T
Q  270 agtcttccat 279  Q
    ||||||||||    
T  15912369 agtcttccat 15912360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 138 - 223
Target Start/End: Complemental strand, 3678112 - 3678027
Alignment:
Q  138 aagtaggagtattcctcaagggtgatgacaagttggtagtcgaggaaagtgaaacaatggcaataagagtcataaaattggaccaa 223  Q
    ||||||||||||||||| ||||||    |||||||||||||| ||||||| ||||||||| ||  || |||||| |||||||||||    
T  3678112 aagtaggagtattcctcgagggtgggagcaagttggtagtcggggaaagtaaaacaatggtaagcagggtcatagaattggaccaa 3678027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 138 - 223
Target Start/End: Complemental strand, 20437113 - 20437028
Alignment:
Q  138 aagtaggagtattcctcaagggtgatgacaagttggtagtcgaggaaagtgaaacaatggcaataagagtcataaaattggaccaa 223  Q
    ||||||||||||||||| ||||||    |||||||||||||| ||||||| ||||||||| ||  || |||||| |||||||||||    
T  20437113 aagtaggagtattcctcgagggtgggagcaagttggtagtcggggaaagtaaaacaatggtaagcagggtcatagaattggaccaa 20437028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 138 - 223
Target Start/End: Complemental strand, 41434278 - 41434193
Alignment:
Q  138 aagtaggagtattcctcaagggtgatgacaagttggtagtcgaggaaagtgaaacaatggcaataagagtcataaaattggaccaa 223  Q
    ||||||||||||||||| ||||||    ||||||| |||||| ||||||| ||||||||| ||  ||||||||| |||||||||||    
T  41434278 aagtaggagtattcctcgagggtgggagcaagttgatagtcggggaaagtaaaacaatggtaagcagagtcatagaattggaccaa 41434193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 138 - 223
Target Start/End: Complemental strand, 30014683 - 30014598
Alignment:
Q  138 aagtaggagtattcctcaagggtgatgacaagttggtagtcgaggaaagtgaaacaatggcaataagagtcataaaattggaccaa 223  Q
    ||||||||||||||||| ||||||    |||||||||||||  ||||||| ||||||||| ||  || |||||| |||||||||||    
T  30014683 aagtaggagtattcctcgagggtgggagcaagttggtagtcagggaaagtaaaacaatggtaagcagggtcatagaattggaccaa 30014598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 16 - 70
Target Start/End: Original strand, 4451764 - 4451818
Alignment:
Q  16 atgatgaaggagctgggtgatgatttcaagattgagcatcataactcttcacctt 70  Q
    |||||||||||  |  |||||||||||||||||||||||||||| ||||| ||||    
T  4451764 atgatgaaggaattatgtgatgatttcaagattgagcatcataattcttctcctt 4451818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 32 - 70
Target Start/End: Complemental strand, 5949057 - 5949019
Alignment:
Q  32 gtgatgatttcaagattgagcatcataactcttcacctt 70  Q
    |||||||||||||||| ||||| ||||||||||||||||    
T  5949057 gtgatgatttcaagatcgagcaccataactcttcacctt 5949019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 32 - 70
Target Start/End: Complemental strand, 37258964 - 37258926
Alignment:
Q  32 gtgatgatttcaagattgagcatcataactcttcacctt 70  Q
    |||||||||||||||| ||||| ||||||||||||||||    
T  37258964 gtgatgatttcaagatcgagcaccataactcttcacctt 37258926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 32 - 70
Target Start/End: Original strand, 46382339 - 46382377
Alignment:
Q  32 gtgatgatttcaagattgagcatcataactcttcacctt 70  Q
    |||||||||||||||| ||||| ||||||||||||||||    
T  46382339 gtgatgatttcaagatcgagcaccataactcttcacctt 46382377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 154; Significance: 2e-81; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 74 - 279
Target Start/End: Original strand, 185462 - 185667
Alignment:
Q  74 tgcgtgcttaggagcaggctcaaggccgttgaaaggttctttgtcagacaccggtaaaccgatcaagtaggagtattcctcaagggtgatgacaagttgg 173  Q
    |||||| |||||||||||||||||||||||||| ||||||| || ||||||||||| |||||||| ||||||||||||||||||||||  ||||||||||    
T  185462 tgcgtgtttaggagcaggctcaaggccgttgaacggttcttcgttagacaccggtataccgatcaggtaggagtattcctcaagggtggggacaagttgg 185561  T
Q  174 tagtcgaggaaagtgaaacaatggcaataagagtcataaaattggaccaaagtatcgaggatcccttgtaccaccttcatctcgaggaggttaagtagtc 273  Q
    ||||||||||||||||||||||||||||||  |||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||    
T  185562 tagtcgaggaaagtgaaacaatggcaataatggtcatagaattggaccaaagtatcgaggatcccttgtaccaccttcgtctcgaggaggttaagcagtc 185661  T
Q  274 ttccat 279  Q
    ||||||    
T  185662 ttccat 185667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 93; Significance: 5e-45; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 164 - 279
Target Start/End: Complemental strand, 27168663 - 27168547
Alignment:
Q  164 gacaagttggtagtcgaggaaagtgaaacaatggcaataa-gagtcataaaattggaccaaagtatcgaggatcccttgtaccaccttcatctcgaggag 262  Q
    |||||||||||||||||||||||||||||||||||||||| | |||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  27168663 gacaagttggtagtcgaggaaagtgaaacaatggcaataaagggtcatagaattggaccaaagtatcgaggatcccttgtaccaccttcgtctcgaggag 27168564  T
Q  263 gttaagtagtcttccat 279  Q
    |||||| ||||||||||    
T  27168563 gttaagcagtcttccat 27168547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 13 - 59
Target Start/End: Complemental strand, 1064614 - 1064568
Alignment:
Q  13 aaaatgatgaaggagctgggtgatgatttcaagattgagcatcataa 59  Q
    |||||| |||||||| || |||| |||||||||||||||||||||||    
T  1064614 aaaatgttgaaggagttgtgtgacgatttcaagattgagcatcataa 1064568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 32 - 70
Target Start/End: Complemental strand, 5627210 - 5627172
Alignment:
Q  32 gtgatgatttcaagattgagcatcataactcttcacctt 70  Q
    |||||||||||||||| ||||| ||||||||||||||||    
T  5627210 gtgatgatttcaagatcgagcaccataactcttcacctt 5627172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 138 - 223
Target Start/End: Original strand, 804605 - 804690
Alignment:
Q  138 aagtaggagtattcctcaagggtgatgacaagttggtagtcgaggaaagtgaaacaatggcaataagagtcataaaattggaccaa 223  Q
    ||||||||||||||||||||||||    |||||||||||||| ||||||| ||||||||| ||  || |||||| |||||||||||    
T  804605 aagtaggagtattcctcaagggtgggagcaagttggtagtcggggaaagtaaaacaatggtaagcagggtcatagaattggaccaa 804690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 138 - 223
Target Start/End: Original strand, 16293483 - 16293568
Alignment:
Q  138 aagtaggagtattcctcaagggtgatgacaagttggtagtcgaggaaagtgaaacaatggcaataagagtcataaaattggaccaa 223  Q
    ||||||||||||||||| ||||||    |||||||||||||| ||||||| ||||||||| ||  || |||||| |||||||||||    
T  16293483 aagtaggagtattcctcgagggtgggagcaagttggtagtcggggaaagtaaaacaatggtaagcagggtcatagaattggaccaa 16293568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 16 - 70
Target Start/End: Complemental strand, 1891688 - 1891634
Alignment:
Q  16 atgatgaaggagctgggtgatgatttcaagattgagcatcataactcttcacctt 70  Q
    |||||||||||  |  |||||||||||||||||||||||||||||||||| ||||    
T  1891688 atgatgaaggaattatgtgatgatttcaagattgagcatcataactcttctcctt 1891634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 138 - 223
Target Start/End: Original strand, 3430351 - 3430436
Alignment:
Q  138 aagtaggagtattcctcaagggtgatgacaagttggtagtcgaggaaagtgaaacaatggcaataagagtcataaaattggaccaa 223  Q
    ||||||||||||||||| ||||||    |||||||||||||  ||||||| ||||||||| ||  || |||||| |||||||||||    
T  3430351 aagtaggagtattcctcgagggtgggagcaagttggtagtcagggaaagtaaaacaatggtaagcagggtcatagaattggaccaa 3430436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 32 - 70
Target Start/End: Original strand, 9471357 - 9471395
Alignment:
Q  32 gtgatgatttcaagattgagcatcataactcttcacctt 70  Q
    |||||||||||||||| ||||| ||||||||||||||||    
T  9471357 gtgatgatttcaagatcgagcaccataactcttcacctt 9471395  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 32 - 70
Target Start/End: Complemental strand, 16391531 - 16391493
Alignment:
Q  32 gtgatgatttcaagattgagcatcataactcttcacctt 70  Q
    |||||||||||||||| ||||| ||||||||||||||||    
T  16391531 gtgatgatttcaagatcgagcaccataactcttcacctt 16391493  T

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Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 32 - 70
Target Start/End: Complemental strand, 30368043 - 30368005
Alignment:
Q  32 gtgatgatttcaagattgagcatcataactcttcacctt 70  Q
    |||||||||||||||| ||||| ||||||||||||||||    
T  30368043 gtgatgatttcaagatcgagcaccataactcttcacctt 30368005  T

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Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 13 - 70
Target Start/End: Original strand, 27546924 - 27546981
Alignment:
Q  13 aaaatgatgaaggagctgggtgatgatttcaagattgagcatcataactcttcacctt 70  Q
    ||||||||||||||  || |||||||||||||||||||||||||||||||||| ||||    
T  27546924 aaaatgatgaaggaattgtgtgatgatttcaagattgagcatcataactcttctcctt 27546981  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 16 - 70
Target Start/End: Original strand, 25708979 - 25709033
Alignment:
Q  16 atgatgaaggagctgggtgatgatttcaagattgagcatcataactcttcacctt 70  Q
    |||||||||||  |  |||||||||||||||||||||||||||||||||| ||||    
T  25708979 atgatgaaggaattatgtgatgatttcaagattgagcatcataactcttctcctt 25709033  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 32 - 70
Target Start/End: Complemental strand, 9134508 - 9134470
Alignment:
Q  32 gtgatgatttcaagattgagcatcataactcttcacctt 70  Q
    |||||||||||||||| ||||| ||||||||||||||||    
T  9134508 gtgatgatttcaagatcgagcaccataactcttcacctt 9134470  T

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Target: scaffold0031 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 16 - 70
Target Start/End: Complemental strand, 16622 - 16568
Alignment:
Q  16 atgatgaaggagctgggtgatgatttcaagattgagcatcataactcttcacctt 70  Q
    |||||||||||  |  |||||||||||||||||||||||||||||||||| ||||    
T  16622 atgatgaaggaattatgtgatgatttcaagattgagcatcataactcttctcctt 16568  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 16 - 70
Target Start/End: Complemental strand, 26722493 - 26722439
Alignment:
Q  16 atgatgaaggagctgggtgatgatttcaagattgagcatcataactcttcacctt 70  Q
    |||||||||||  |  |||||||||||||||||||||||||||||||||| ||||    
T  26722493 atgatgaaggaattatgtgatgatttcaagattgagcatcataactcttctcctt 26722439  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 13 - 70
Target Start/End: Complemental strand, 34532663 - 34532606
Alignment:
Q  13 aaaatgatgaaggagctgggtgatgatttcaagattgagcatcataactcttcacctt 70  Q
    ||||||||||| ||  || | |||||||||||||||||||||||||||||||| ||||    
T  34532663 aaaatgatgaaagaattgtgcgatgatttcaagattgagcatcataactcttctcctt 34532606  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 32 - 70
Target Start/End: Original strand, 12385703 - 12385741
Alignment:
Q  32 gtgatgatttcaagattgagcatcataactcttcacctt 70  Q
    |||||||||||||||| ||||| ||||||||||||||||    
T  12385703 gtgatgatttcaagatcgagcaccataactcttcacctt 12385741  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 13 - 70
Target Start/End: Complemental strand, 1880330 - 1880273
Alignment:
Q  13 aaaatgatgaaggagctgggtgatgatttcaagattgagcatcataactcttcacctt 70  Q
    ||||||||||| ||  || | |||||||||||||||||||||||||||||||| ||||    
T  1880330 aaaatgatgaaagaattgtgcgatgatttcaagattgagcatcataactcttctcctt 1880273  T

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Target: scaffold0029 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 32 - 70
Target Start/End: Original strand, 31214 - 31252
Alignment:
Q  32 gtgatgatttcaagattgagcatcataactcttcacctt 70  Q
    |||||||||||||||| ||||| ||||||||||||||||    
T  31214 gtgatgatttcaagatcgagcaccataactcttcacctt 31252  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 16 - 70
Target Start/End: Original strand, 16770350 - 16770404
Alignment:
Q  16 atgatgaaggagctgggtgatgatttcaagattgagcatcataactcttcacctt 70  Q
    |||||||||||  |  |||||| ||||||||||||||||||||||||||| ||||    
T  16770350 atgatgaaggaattatgtgatgttttcaagattgagcatcataactcttctcctt 16770404  T

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