View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5489_high_5 (Length: 526)

Name: NF5489_high_5
Description: NF5489
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5489_high_5
NF5489_high_5
[»] chr7 (20 HSPs)
chr7 (16-265)||(36221990-36222234)
chr7 (330-503)||(36221753-36221926)
chr7 (52-265)||(36217999-36218207)
chr7 (49-259)||(35938799-35939004)
chr7 (331-503)||(36217762-36217934)
chr7 (48-239)||(32727038-32727224)
chr7 (48-256)||(35976915-35977118)
chr7 (48-256)||(35998327-35998530)
chr7 (52-259)||(35981485-35981687)
chr7 (52-259)||(36002897-36003099)
chr7 (370-503)||(32727359-32727492)
chr7 (48-171)||(35957460-35957583)
chr7 (67-239)||(35946271-35946438)
chr7 (370-503)||(35981797-35981930)
chr7 (370-503)||(36003209-36003342)
chr7 (66-256)||(35951909-35952094)
chr7 (331-503)||(35946529-35946701)
chr7 (370-503)||(35977231-35977364)
chr7 (370-503)||(35998643-35998776)
chr7 (387-499)||(35939131-35939243)
[»] chr1 (4 HSPs)
chr1 (51-256)||(18125183-18125383)
chr1 (51-180)||(18117530-18117659)
chr1 (370-440)||(18125496-18125566)
chr1 (331-498)||(18117804-18117971)
[»] chr2 (2 HSPs)
chr2 (48-152)||(26329140-26329244)
chr2 (403-499)||(26328799-26328895)


Alignment Details
Target: chr7 (Bit Score: 222; Significance: 1e-122; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 16 - 265
Target Start/End: Complemental strand, 36222234 - 36221990
Alignment:
Q  16 cacagacaagtaatttcaacaatagaaaatgaataatctttgggatacaaggaaaaataagcaaaacaatgcctcaaataggatggcatttcatcatagc 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36222234 cacagacaagtaatttcaacaatagaaaatgaataatctttgggatacaaggaaaaataagcaaaacaatgcctcaaataggatggcatttcatcatagc 36222135  T
Q  116 ttaattttaatgcaggtaaaatatcacctttcttttgttctaagttccaaatctcatggtctcttacgaatatccacttatttaatttaaatcaaatttt 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     ||||||||||||||    
T  36222134 ttaattttaatgcaggtaaaatatcacctttcttttgttctaagttccaaatctcatggtctcttacgaatatccacttat-----ttaaatcaaatttt 36222040  T
Q  216 gagaatagagaacttcctaatgttttgacagccagcggaactccagcaca 265  Q
    || || ||||||||||||||||||||||||||||||||||||||||||||    
T  36222039 gataacagagaacttcctaatgttttgacagccagcggaactccagcaca 36221990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 158; E-Value: 8e-84
Query Start/End: Original strand, 330 - 503
Target Start/End: Complemental strand, 36221926 - 36221753
Alignment:
Q  330 aaatgcccatttcacaaacaaatacaaatagctctcttgcgaaagaccttccaaaatatacgaaggaacaatacccatcatggaagcaattgagttacta 429  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||    
T  36221926 aaatgcccatttcacaaacaaatacaaacagctctcttgcgaaagaccttccaaaatatacgaaggaacagtactcatcatggaagcaattgagttacta 36221827  T
Q  430 cgtgtcgtcactatgactttactttcttctccaccaactttgatcaaatttaacaactcaatccattttgcacg 503  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36221826 catgtcgtcactatgactttactttcttctccaccaactttgatcaaatttaacaactcaatccattttgcacg 36221753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 52 - 265
Target Start/End: Complemental strand, 36218207 - 36217999
Alignment:
Q  52 tctttgggatacaaggaaaaataagcaaaacaatgcctcaaataggatggcatttcatcatagcttaattttaatgcaggtaaaatatcacctttctttt 151  Q
    ||||||||||||||||||||| |||||||||| || |||| ||| |||||||||| |||||||||||||||||| ||||||||||||||| ||||||| |    
T  36218207 tctttgggatacaaggaaaaacaagcaaaacattgtctcagatatgatggcatttgatcatagcttaattttaaagcaggtaaaatatcatctttcttct 36218108  T
Q  152 gttctaagttccaaatctcatggtctcttacgaatatccacttatttaatttaaatcaaattttgagaatagagaacttcctaatgttttgacagccagc 251  Q
    ||||||| ||||| ||||||||||||||||| |||| ||||||     || |||||||||||||||||| |||||||||||||  ||| | |||||||||    
T  36218107 gttctaaattccatatctcatggtctcttacaaataaccactt-----atctaaatcaaattttgagaacagagaacttcctaccgttctcacagccagc 36218013  T
Q  252 ggaactccagcaca 265  Q
    ||||||||||||||    
T  36218012 ggaactccagcaca 36217999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 49 - 259
Target Start/End: Original strand, 35938799 - 35939004
Alignment:
Q  49 taatctttgggatacaaggaaaaataagcaaaacaatgcctcaaataggatggcatttcatcatagcttaattttaatgcaggtaaaatatcacctttct 148  Q
    |||||||||||||| | |||||||||||||||||| |||||||| ||||||||||||| ||||||||||||||||| ||||||||||||||||  || ||    
T  35938799 taatctttgggatatagggaaaaataagcaaaacagtgcctcaagtaggatggcatttgatcatagcttaattttagtgcaggtaaaatatcattttgct 35938898  T
Q  149 tttgttctaagttccaaatctcatggtctcttacgaatatccacttatttaatttaaatcaaattttgagaatagagaacttcctaatgttttgacagcc 248  Q
    | |||||||| ||||| ||||||   |||||||| |||  ||||||     |||||||||||||||||| || |||||||||||||||||||| ||||||    
T  35938899 tctgttctaaattccatatctcagaatctcttacaaattcccactt-----atttaaatcaaattttgaaaacagagaacttcctaatgttttcacagcc 35938993  T
Q  249 agcggaactcc 259  Q
    || ||||||||    
T  35938994 agtggaactcc 35939004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 331 - 503
Target Start/End: Complemental strand, 36217934 - 36217762
Alignment:
Q  331 aatgcccatttcacaaacaaatacaaatagctctcttgcgaaagaccttccaaaatatacgaaggaacaatacccatcatggaagcaattgagttactac 430  Q
    ||||||||||||||||||| | ||||| |   ||||  ||||||||||||||||| ||||||||||||| |||||||||||||||||| |||||| ||||    
T  36217934 aatgcccatttcacaaacagagacaaacaatcctctaacgaaagaccttccaaaacatacgaaggaacagtacccatcatggaagcaactgagttgctac 36217835  T
Q  431 gtgtcgtcactatgactttactttcttctccaccaactttgatcaaatttaacaactcaatccattttgcacg 503  Q
    |||| |||||||| | ||||||| || || |||||||||||||||||| |  |||||||||||||||||||||    
T  36217834 gtgtggtcactataattttacttcctactgcaccaactttgatcaaatcttccaactcaatccattttgcacg 36217762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 48 - 239
Target Start/End: Original strand, 32727038 - 32727224
Alignment:
Q  48 ataatctttgggatacaaggaaaaataagcaaaacaatgcctcaaataggatggcatttcatcatagcttaattttaatgcaggtaaaatatcacctttc 147  Q
    ||||||||||||||| | ||||||  |||||||||| |||||||||||||||||||||| |||||||||||| || |||||||||||||||||| |||||    
T  32727038 ataatctttgggataaagggaaaagaaagcaaaacattgcctcaaataggatggcatttgatcatagcttaacttcaatgcaggtaaaatatcatctttc 32727137  T
Q  148 ttttgttctaagttccaaatctcatggtctcttacgaatatccacttatttaatttaaatcaaattttgagaatagagaacttcctaatgtt 239  Q
    || |||||||| ||||| ||||||   ||||| || |||||||||||     |||||||||| ||||||||||||  ||||||| |||||||    
T  32727138 ttctgttctaaattccatatctcagaatctctcacaaatatccactt-----atttaaatcatattttgagaataaggaacttcgtaatgtt 32727224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 48 - 256
Target Start/End: Original strand, 35976915 - 35977118
Alignment:
Q  48 ataatctttgggatacaaggaaaaataagcaaaacaatgcctcaaataggatggcatttcatcatagcttaattttaatgcaggtaaaatatcacctttc 147  Q
    ||||||||||||||| | ||||| |||| ||||||| || |||| ||| |||||||||| |||||||||||||||||  |||||||||||| || |||||    
T  35976915 ataatctttgggataaagggaaatataaacaaaacattgtctcatatatgatggcatttgatcatagcttaattttagcgcaggtaaaataccatctttc 35977014  T
Q  148 ttttgttctaagttccaaatctcatggtctcttacgaatatccacttatttaatttaaatcaaattttgagaatagagaacttcctaatgttttgacagc 247  Q
    ||||||||||| ||||| ||||||  ||| || ||||||  ||||||       ||| |||||| |||||||| |||||||||||||||||| | |||||    
T  35977015 ttttgttctaaattccacatctcagagtccctaacgaattcccactt-----gcttatatcaaagtttgagaagagagaacttcctaatgttctcacagc 35977109  T
Q  248 cagcggaac 256  Q
     ||||||||    
T  35977110 tagcggaac 35977118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 48 - 256
Target Start/End: Original strand, 35998327 - 35998530
Alignment:
Q  48 ataatctttgggatacaaggaaaaataagcaaaacaatgcctcaaataggatggcatttcatcatagcttaattttaatgcaggtaaaatatcacctttc 147  Q
    ||||||||||||||| | ||||| |||| ||||||| || |||| ||| |||||||||| |||||||||||||||||  |||||||||||| || |||||    
T  35998327 ataatctttgggataaagggaaatataaacaaaacattgtctcatatatgatggcatttgatcatagcttaattttagcgcaggtaaaataccatctttc 35998426  T
Q  148 ttttgttctaagttccaaatctcatggtctcttacgaatatccacttatttaatttaaatcaaattttgagaatagagaacttcctaatgttttgacagc 247  Q
    ||||||||||| ||||| ||||||  ||| || ||||||  ||||||       ||| |||||| |||||||| |||||||||||||||||| | |||||    
T  35998427 ttttgttctaaattccacatctcagagtccctaacgaattcccactt-----gcttatatcaaagtttgagaagagagaacttcctaatgttctcacagc 35998521  T
Q  248 cagcggaac 256  Q
     ||||||||    
T  35998522 tagcggaac 35998530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 52 - 259
Target Start/End: Original strand, 35981485 - 35981687
Alignment:
Q  52 tctttgggatacaaggaaaaataagcaaaacaatgcctcaaataggatggcatttcatcatagcttaattttaatgcaggtaaaatatcacctttctttt 151  Q
    ||||||||||| | |||||| ||||||||||| |||||||||||||||||||||| |||||| ||||| || |  ||||||||||||||| ||||||| |    
T  35981485 tctttgggatagagggaaaagtaagcaaaacactgcctcaaataggatggcatttgatcataacttaacttcagggcaggtaaaatatcatctttcttct 35981584  T
Q  152 gttctaagttccaaatctcatggtctcttacgaatatccacttatttaatttaaatcaaattttgagaatagagaacttcctaatgttttgacagccagc 251  Q
    | ||||  ||||| | ||||   || ||||| |||| ||||||     |||||||||||  ||||| || || ||||||||||||||||||||||| ||     
T  35981585 gctctagattccataactcagaatcccttacaaatacccactt-----atttaaatcaagctttgaaaacagggaacttcctaatgttttgacagctagt 35981679  T
Q  252 ggaactcc 259  Q
    ||||||||    
T  35981680 ggaactcc 35981687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 52 - 259
Target Start/End: Original strand, 36002897 - 36003099
Alignment:
Q  52 tctttgggatacaaggaaaaataagcaaaacaatgcctcaaataggatggcatttcatcatagcttaattttaatgcaggtaaaatatcacctttctttt 151  Q
    ||||||||||| | |||||| ||||||||||| |||||||||||||||||||||| |||||| ||||| || |  ||||||||||||||| ||||||| |    
T  36002897 tctttgggatagagggaaaagtaagcaaaacactgcctcaaataggatggcatttgatcataacttaacttcagggcaggtaaaatatcatctttcttct 36002996  T
Q  152 gttctaagttccaaatctcatggtctcttacgaatatccacttatttaatttaaatcaaattttgagaatagagaacttcctaatgttttgacagccagc 251  Q
    | ||||  ||||| | ||||   || ||||| |||| ||||||     |||||||||||  ||||| || || ||||||||||||||||||||||| ||     
T  36002997 gctctagattccataactcagaatcccttacaaatacccactt-----atttaaatcaagctttgaaaacagggaacttcctaatgttttgacagctagt 36003091  T
Q  252 ggaactcc 259  Q
    ||||||||    
T  36003092 ggaactcc 36003099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 370 - 503
Target Start/End: Original strand, 32727359 - 32727492
Alignment:
Q  370 gaaagaccttccaaaatatacgaaggaacaatacccatcatggaagcaattgagttactacgtgtcgtcactatgactttactttcttctccaccaactt 469  Q
    ||||||||||||||||  ||||| |||| | |||||||||| ||||||| |||||| ||||||||||||||||||| ||| ||| || || |||| ||||    
T  32727359 gaaagaccttccaaaacgtacgagggaatagtacccatcattgaagcaaatgagttgctacgtgtcgtcactatgattttgcttcctgctgcaccgactt 32727458  T
Q  470 tgatcaaatttaacaactcaatccattttgcacg 503  Q
    | ||||||| || |||||||||||||||||||||    
T  32727459 ttatcaaatctatcaactcaatccattttgcacg 32727492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 48 - 171
Target Start/End: Original strand, 35957460 - 35957583
Alignment:
Q  48 ataatctttgggatacaaggaaaaataagcaaaacaatgcctcaaataggatggcatttcatcatagcttaattttaatgcaggtaaaatatcacctttc 147  Q
    ||||||||||||||| | |||||||||||||||||| || |||| ||| |||||||||| |||||| ||||||||||  |||||||||||||||    ||    
T  35957460 ataatctttgggataaagggaaaaataagcaaaacattgtctcagatatgatggcatttgatcataacttaattttagcgcaggtaaaatatcattaatc 35957559  T
Q  148 ttttgttctaagttccaaatctca 171  Q
    ||||||||||| ||||| ||||||    
T  35957560 ttttgttctaaattccacatctca 35957583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 67 - 239
Target Start/End: Original strand, 35946271 - 35946438
Alignment:
Q  67 gaaaaataagcaaaacaatgcctcaaataggatggcatttcatcatagcttaattttaatgcaggtaaaatatcacctttcttttgttctaagttccaaa 166  Q
    ||||||||||||||||| || || | ||| |||||||||| |||||| ||||||||||  |||||||| |||||| |||||||||||||||| ||||| |    
T  35946271 gaaaaataagcaaaacattgtcttagatatgatggcatttgatcataacttaattttagcgcaggtaagatatcatctttcttttgttctaaattccaca 35946370  T
Q  167 tctcatggtctcttacgaatatccacttatttaatttaaatcaaattttgagaatagagaacttcctaatgtt 239  Q
    |||||  ||| || ||||||  ||||||     | ||| |||||| |||||||| ||||||||| ||||||||    
T  35946371 tctcagagtccctaacgaattcccactt-----acttatatcaaagtttgagaagagagaacttgctaatgtt 35946438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 370 - 503
Target Start/End: Original strand, 35981797 - 35981930
Alignment:
Q  370 gaaagaccttccaaaatatacgaaggaacaatacccatcatggaagcaattgagttactacgtgtcgtcactatgactttactttcttctccaccaactt 469  Q
    |||||||||| ||||| ||||| |||||||  ||||||||| |||| |||||||||||||||||| ||||| |  | ||| ||| |  || | |||||||    
T  35981797 gaaagacctttcaaaagatacggaggaacatcacccatcatcgaagaaattgagttactacgtgtagtcaccaaaattttgcttccagctgcgccaactt 35981896  T
Q  470 tgatcaaatttaacaactcaatccattttgcacg 503  Q
    ||||||||| |  |||||||||||||||||||||    
T  35981897 tgatcaaatctttcaactcaatccattttgcacg 35981930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 370 - 503
Target Start/End: Original strand, 36003209 - 36003342
Alignment:
Q  370 gaaagaccttccaaaatatacgaaggaacaatacccatcatggaagcaattgagttactacgtgtcgtcactatgactttactttcttctccaccaactt 469  Q
    |||||||||| ||||| ||||| |||||||  ||||||||| |||| |||||||||||||||||| ||||| |  | ||| ||| |  || | |||||||    
T  36003209 gaaagacctttcaaaagatacggaggaacatcacccatcatcgaagaaattgagttactacgtgtagtcaccaaaattttgcttccagctgcgccaactt 36003308  T
Q  470 tgatcaaatttaacaactcaatccattttgcacg 503  Q
    ||||||||| |  |||||||||||||||||||||    
T  36003309 tgatcaaatctttcaactcaatccattttgcacg 36003342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 66 - 256
Target Start/End: Original strand, 35951909 - 35952094
Alignment:
Q  66 ggaaaaataagcaaaacaatgcctcaaataggatggcatttcatcatagcttaattttaatgcaggtaaaatatcacctttcttttgttctaagttccaa 165  Q
    ||||||| | |||| |||||| || | |||||||| ||||| ||||||||||||||| |  ||||||||||||||| |||||| ||||||||| ||||||    
T  35951909 ggaaaaagaggcaatacaatgtcttagataggatgacatttgatcatagcttaatttcagggcaggtaaaatatcatctttctgttgttctaaattccaa 35952008  T
Q  166 atctcatggtctcttacgaatatccacttatttaatttaaatcaaattttgagaatagagaacttcctaatgttttgacagccagcggaac 256  Q
    ||  ||  |||||| || |||  ||||||     | ||||||| || |||||||| || |||||||| |||| ||| |||||||| |||||    
T  35952009 atagcagagtctctgacaaattcccactt-----acttaaatcgaagtttgagaagagggaacttcccaatgatttcacagccagtggaac 35952094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 331 - 503
Target Start/End: Original strand, 35946529 - 35946701
Alignment:
Q  331 aatgcccatttcacaaacaaatacaaatagctctcttgcgaaagaccttccaaaatatacgaaggaacaatacccatcatggaagcaattgagttactac 430  Q
    ||||||||||| ||||||| | ||||| |  ||| | | |||||||||||||||||||| | |||||||  ||||||||| |||||||||| |||||| |    
T  35946529 aatgcccatttgacaaacagagacaaacaattctttggagaaagaccttccaaaatatatggaggaacatcacccatcatcgaagcaattgcgttactgc 35946628  T
Q  431 gtgtcgtcactatgactttactttcttctccaccaactttgatcaaatttaacaactcaatccattttgcacg 503  Q
    |||| ||||| || | ||| ||| ||  | |||||||||| ||||||| |  ||| |||| ||| ||||||||    
T  35946629 gtgttgtcaccataattttgcttcctggtgcaccaacttttatcaaatctttcaattcaagccactttgcacg 35946701  T

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Target: chr7; HSP #18
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 370 - 503
Target Start/End: Original strand, 35977231 - 35977364
Alignment:
Q  370 gaaagaccttccaaaatatacgaaggaacaatacccatcatggaagcaattgagttactacgtgtcgtcactatgactttactttcttctccaccaactt 469  Q
    |||||||||| ||||| ||| | |||||||  ||||||||| ||||||||||||||||||||||| ||||| || | ||| ||| ||  | |||||||||    
T  35977231 gaaagacctttcaaaagatatggaggaacatcacccatcatcgaagcaattgagttactacgtgttgtcacgataattttgcttcctggtgcaccaactt 35977330  T
Q  470 tgatcaaatttaacaactcaatccattttgcacg 503  Q
    | ||||||| |  ||| |||| ||| ||||||||    
T  35977331 ttatcaaatctttcaattcaagccactttgcacg 35977364  T

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Target: chr7; HSP #19
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 370 - 503
Target Start/End: Original strand, 35998643 - 35998776
Alignment:
Q  370 gaaagaccttccaaaatatacgaaggaacaatacccatcatggaagcaattgagttactacgtgtcgtcactatgactttactttcttctccaccaactt 469  Q
    |||||||||| ||||| ||| | |||||||  ||||||||| ||||||||||||||||||||||| ||||| || | ||| ||| ||  | |||||||||    
T  35998643 gaaagacctttcaaaagatatggaggaacatcacccatcatcgaagcaattgagttactacgtgttgtcacgataattttgcttcctggtgcaccaactt 35998742  T
Q  470 tgatcaaatttaacaactcaatccattttgcacg 503  Q
    | ||||||| |  ||| |||| ||| ||||||||    
T  35998743 ttatcaaatctttcaattcaagccactttgcacg 35998776  T

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Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 387 - 499
Target Start/End: Original strand, 35939131 - 35939243
Alignment:
Q  387 atacgaaggaacaatacccatcatggaagcaattgagttactacgtgtcgtcactatgactttactttcttctccaccaactttgatcaaatttaacaac 486  Q
    |||||| |||||| | ||| |||| |||||||| || ||||| ||||| ||||| |||| ||| | |||| ||   |||||||| ||||||| |  ||||    
T  35939131 atacgagggaacagtgcccgtcattgaagcaatcgatttactgcgtgttgtcacaatgattttgcattctactgtgccaacttttatcaaatctttcaac 35939230  T
Q  487 tcaatccattttg 499  Q
    |||||||||||||    
T  35939231 tcaatccattttg 35939243  T

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Target: chr1 (Bit Score: 66; Significance: 6e-29; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 51 - 256
Target Start/End: Original strand, 18125183 - 18125383
Alignment:
Q  51 atctttgggatacaaggaaaaataagcaaaacaatgcctcaaataggatggcatttcatcatagcttaattttaatgcaggtaaaatatcacctttcttt 150  Q
    |||||| ||||| | ||| ||||||||||| || ||||| ||||||||||||||||  |||||||| ||||||| |||||||||||||||| |||| |      
T  18125183 atctttaggataaagggagaaataagcaaagcattgccttaaataggatggcatttggtcatagctcaattttagtgcaggtaaaatatcatctttttgc 18125282  T
Q  151 tgttctaagttccaaatctcatggtctcttacgaatatccacttatttaatttaaatcaaattttgagaatagagaacttcctaatgttttgacagccag 250  Q
    |||| ||| ||||| | ||||   |||||||| ||||||||     |  |||||||||||||||||||||||| ||||||||||||||| | ||||| ||    
T  18125283 tgttttaaattccacagctcagaatctcttacaaatatcca-----tgtatttaaatcaaattttgagaatagggaacttcctaatgttctaacagctag 18125377  T
Q  251 cggaac 256  Q
     |||||    
T  18125378 tggaac 18125383  T

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Target: chr1; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 51 - 180
Target Start/End: Original strand, 18117530 - 18117659
Alignment:
Q  51 atctttgggatacaaggaaaaataagcaaaacaatgcctcaaataggatggcatttcatcatagcttaattttaatgcaggtaaaatatcacctttcttt 150  Q
    ||||||||||||||  | ||  |||||||| || ||||| |||||||||||||||| ||||||||||||||||| ||||||||||||||||  || ||||    
T  18117530 atctttgggatacatagcaatgtaagcaaagcagtgccttaaataggatggcattttatcatagcttaattttagtgcaggtaaaatatcattttgcttt 18117629  T
Q  151 tgttctaagttccaaatctcatggtctctt 180  Q
    ||||||||  |||| ||||||  |||||||    
T  18117630 tgttctaaagtccacatctcagagtctctt 18117659  T

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Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 370 - 440
Target Start/End: Original strand, 18125496 - 18125566
Alignment:
Q  370 gaaagaccttccaaaatatacgaaggaacaatacccatcatggaagcaattgagttactacgtgtcgtcac 440  Q
    |||||||||| ||||| ||| || |||||| |||||||||| ||||||||||||||| ||||||| |||||    
T  18125496 gaaagaccttgcaaaacatatgagggaacattacccatcatcgaagcaattgagttattacgtgttgtcac 18125566  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 331 - 498
Target Start/End: Original strand, 18117804 - 18117971
Alignment:
Q  331 aatgcccatttcacaaacaaatacaaatagctctcttgcgaaagaccttccaaaatatacgaaggaacaatacccatcatggaagcaattgagttactac 430  Q
    ||||||||||||||||||||| | ||| || | ||    ||||| ||||  |||| ||| || |||||| |||||||||| || ||||||||||| || |    
T  18117804 aatgcccatttcacaaacaaagataaacagttttcaatagaaaggccttttaaaacataggagggaacagtacccatcatcgatgcaattgagttgctgc 18117903  T
Q  431 gtgtcgtcactatgactttactttcttctccaccaactttgatcaaatttaacaactcaatccatttt 498  Q
    |||| ||| | |||||||| ||| || ||   |||||||| ||||||| |  |||||| |||||||||    
T  18117904 gtgttgtcgccatgactttgcttcctactgtgccaactttaatcaaatctttcaactcgatccatttt 18117971  T

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Target: chr2 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 48 - 152
Target Start/End: Complemental strand, 26329244 - 26329140
Alignment:
Q  48 ataatctttgggatacaaggaaaaataagcaaaacaatgcctcaaataggatggcatttcatcatagcttaattttaatgcaggtaaaatatcacctttc 147  Q
    ||||||||||||| | | ||||||||||||||||||||| ||||||||||||||||||| |||||||||||| || |   |||||||||||||| ||||     
T  26329244 ataatctttgggaaaaagggaaaaataagcaaaacaatgtctcaaataggatggcatttgatcatagcttaacttaagcacaggtaaaatatcatctttg 26329145  T
Q  148 ttttg 152  Q
    |||||    
T  26329144 ttttg 26329140  T

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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 403 - 499
Target Start/End: Complemental strand, 26328895 - 26328799
Alignment:
Q  403 cccatcatggaagcaattgagttactacgtgtcgtcactatgactttactttcttctccaccaactttgatcaaatttaacaactcaatccattttg 499  Q
    |||||||| ||||||||  ||||||||||||| ||||||| || ||| |||||| || |||||||||| |||| || |  |||||||||||||||||    
T  26328895 cccatcatcgaagcaatcaagttactacgtgttgtcactaagattttgctttctactgcaccaacttttatcagatctttcaactcaatccattttg 26328799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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