View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5489_high_9 (Length: 477)
Name: NF5489_high_9
Description: NF5489
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5489_high_9 |
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| [»] scaffold0620 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 331; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 7 - 408
Target Start/End: Original strand, 34095499 - 34095910
Alignment:
| Q |
7 |
caatgatgcatcatcacccatggctcctttaaattaaaacttcgttctcatcaaccaaatgctccaaagtgtaatttctttttacattttgacgtgtagc |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34095499 |
caatgatgcatcatcacccatggctcctttaaattaaaacttcgttctcatcaaccaaatgctccaaagtgtaatttctttttacattttgacgtgtagc |
34095598 |
T |
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| Q |
107 |
ctctttgtgtctgtcacacatgacattcatcttttcctttcattccttcaccactcacacagtcgcaccagtaaatttgatcggtctcttctcttcttgg |
206 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
34095599 |
ttctttgtgtctgtcacacatgacattcatcttttcctttcattccttcaccactcacacagtcgcaccagtaaatttgatcagtctcttctcttcttgg |
34095698 |
T |
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| Q |
207 |
cttttcctccttacgtcaaaatcatattcacaaatcacaatggtggaaatcgtcggttctgcaactgcttcagaccggaaaaccatcagttttgtcggtt |
306 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| |
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| T |
34095699 |
cttttcctccttacgtcaaaagcatattcacaaatcacaatggtggaaatcgtcggttctgcaaccgctttagaccggaaaaccatcagttttgtcggtt |
34095798 |
T |
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| Q |
307 |
ttttccgtttctggagcatcctcc---tgttatgaagtcagtcc-aaaagaaagaagga------ggctcgggcttgggctttcaaatatcatttcagcc |
396 |
Q |
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||||| ||||||||||| |||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| ||||||||| |
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| T |
34095799 |
ttttctgtttctggagcttcctcctgttgttatgaagtcagtccgaaaagaaagaaggaggctcgggctcgggcttgggctttcaaatattatttcagcc |
34095898 |
T |
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| Q |
397 |
cacgtagtttat |
408 |
Q |
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| T |
34095899 |
tacgtagtttat |
34095910 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 402 - 477
Target Start/End: Original strand, 34100145 - 34100220
Alignment:
| Q |
402 |
agtttatactctcagttattattactaactatatatacttacttgtctttctagggcttcccaatttttactaata |
477 |
Q |
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| T |
34100145 |
agtttatactctcagttattattactaactatatatacttacttgtctctctagggcttcccaatttttactaata |
34100220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 361 - 461
Target Start/End: Original strand, 34118125 - 34118217
Alignment:
| Q |
361 |
aggctcgggcttgggctttcaaatatcatttcagcccacgtagtttatactctcagttattattactaactatatatacttacttgtctttctagggctt |
460 |
Q |
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||||| ||||||||| |||||| ||||||| |||||||| ||| ||||||||||||||| | ||||||||||||||||||| | |||||||||| |
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| T |
34118125 |
aggcttgggcttgggttttcaattatcatt-cagcccacatagcttatactctcagttact-------actatatatacttacttgtttctctagggctt |
34118216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 6 - 72
Target Start/End: Original strand, 34088179 - 34088243
Alignment:
| Q |
6 |
acaatgatgcatcatcacccatggctcctttaaattaaaacttcgttc-tcatcaaccaaatgctcca |
72 |
Q |
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| T |
34088179 |
acaatgatgcatcatc---catggatcctttaaaataaaatttcgttcctcatcaaccaaatgctcca |
34088243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0620 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0620
Description:
Target: scaffold0620; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 6 - 72
Target Start/End: Original strand, 1632 - 1696
Alignment:
| Q |
6 |
acaatgatgcatcatcacccatggctcctttaaattaaaacttcgtt-ctcatcaaccaaatgctcca |
72 |
Q |
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|||||||||||||||| ||||||||||||||| ||||| |||||| |||||||||||||||||||| |
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| T |
1632 |
acaatgatgcatcatc---catggctcctttaaaataaaatttcgttcctcatcaaccaaatgctcca |
1696 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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