View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5489_low_10 (Length: 463)
Name: NF5489_low_10
Description: NF5489
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5489_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 423; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 11 - 445
Target Start/End: Original strand, 55173280 - 55173714
Alignment:
| Q |
11 |
atcatcaaatactctgtactgagcggtccaattttcagtccatagggaaggcttgtatggtttgtttggtcctgagaaggtatcaccacaatgtcttcca |
110 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55173280 |
atcaccaaatactctgtactgagcggtccaattttcagtccatagggaaggcttgtatggtttgtttggtcctgagaaggtatcaccacaatgtcttcca |
55173379 |
T |
|
| Q |
111 |
ttgcatgcattgatctgccaaataaaattattaaactcatgatcacatcatgactgtcctcactttgttttatgcctaaaattaattacttacgacggga |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55173380 |
ttgcatgcattgatctgccaaataaaattattaaactcatgatcacatcatgactgtcctcactttgttttatgcctaaaattaattacttacgacggga |
55173479 |
T |
|
| Q |
211 |
tcgggagcatccttctgcttgcacatgatccacggaactcctatgtccaaggccactgccatatttgcggcccactgaacataactatctcccttctctt |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55173480 |
tcgggagcatccttctgcttgcacatgatccacggaactccgatgtccaaggccactgccatatttgcggcccactgaacataactatctcccttctctt |
55173579 |
T |
|
| Q |
311 |
cataagcaagttgaatatggttgtactcattttcaatttgtgccaagatgatggggcctccttggggagcaaagagcttctcatctttcatcatttggat |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55173580 |
cataagcaagttgaatatggttgtactcattttcaatttgtgccaagatgatggggcctccttggggagcaaagagcttctcatctttcatcatttggat |
55173679 |
T |
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| Q |
411 |
aatttttgacacgtatgctttcatgtgtttcttgt |
445 |
Q |
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| T |
55173680 |
aatttttgacacgtatgctttcatgtatttcttgt |
55173714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 61; Significance: 5e-26; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 27 - 131
Target Start/End: Complemental strand, 27721690 - 27721586
Alignment:
| Q |
27 |
tactgagcggtccaattttcagtccatagggaaggcttgtatggtttgtttggtcctgagaaggtatcaccacaatgtcttccattgcatgcattgatct |
126 |
Q |
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|||||||| ||||| ||||||||||||| | |||| ||||||||||||||||| |||| |||||||||||||| || ||||||||||||||||| |||| |
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| T |
27721690 |
tactgagcagtccagttttcagtccatatgaaaggtttgtatggtttgtttggacctgtaaaggtatcaccacagtgccttccattgcatgcattaatct |
27721591 |
T |
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| Q |
127 |
gccaa |
131 |
Q |
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||||| |
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| T |
27721590 |
gccaa |
27721586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 198 - 347
Target Start/End: Complemental strand, 27721296 - 27721147
Alignment:
| Q |
198 |
acttacgacgggatcgggagcatccttctgcttgcacatgatccacggaactcctatgtccaaggccactgccatatttgcggcccactgaacataacta |
297 |
Q |
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|||||| || ||||| ||||||||||||||||||||||||| ||| |||||||| | | | | |||||||| ||||| ||||||||||||||| || |
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| T |
27721296 |
acttacaactggatcaggagcatccttctgcttgcacatgacccatggaactccattatatagtgaaactgccatttttgcagcccactgaacataatta |
27721197 |
T |
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| Q |
298 |
tctcccttctcttcataagcaagttgaatatggttgtactcattttcaat |
347 |
Q |
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||||| | |||||||||||||||| || |||||||||||||| ||||| |
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| T |
27721196 |
tctccatcagcttcataagcaagttggatgtggttgtactcattctcaat |
27721147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 352 - 401
Target Start/End: Complemental strand, 27721035 - 27720986
Alignment:
| Q |
352 |
gccaagatgatggggcctccttggggagcaaagagcttctcatctttcat |
401 |
Q |
| |
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||||||||||| ||||||||||| ||||||||||| || || |||||||| |
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| T |
27721035 |
gccaagatgatagggcctccttgaggagcaaagagtttttcttctttcat |
27720986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 198 - 251
Target Start/End: Original strand, 42989290 - 42989343
Alignment:
| Q |
198 |
acttacgacgggatcgggagcatccttctgcttgcacatgatccacggaactcc |
251 |
Q |
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|||||| || ||||| |||||||| | |||||||||||||||||||||||||| |
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| T |
42989290 |
acttacaacaggatcaggagcatcatcttgcttgcacatgatccacggaactcc |
42989343 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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