View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5489_low_17 (Length: 376)
Name: NF5489_low_17
Description: NF5489
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5489_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 183; Significance: 7e-99; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 183; E-Value: 7e-99
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 36168083 - 36167842
Alignment:
| Q |
1 |
tataaaactatactaacaattatttgagagaataaattattacttaactgttacnnnnnnnnnnnctatagcagaaaccatagattacattaacttcatt |
100 |
Q |
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| T |
36168083 |
tataaaactatactaacaattatttgagagaataaattattacttaactgttactttttttt---ccatagcagaaaccatagattacattaacttcatt |
36167987 |
T |
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| Q |
101 |
agaataagttggttgtagctttagtttgataaacttttt-agtataattaaaaatgttgtttagttagagtgatactaaatcatgtctgacaaactgaat |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| |
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| T |
36167986 |
agaataagttggttgtagctttagtttgataaacttttttagtataattaaaaatgcagtttagttaaagtgatactaaatcatgtctgacaaactgaat |
36167887 |
T |
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| Q |
200 |
cctctggagtttcttcatctcagatttaatcacttccacgcttgt |
244 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36167886 |
cctctggagtttcttcatctcagatttaatcacttccacgcttgt |
36167842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 245 - 339
Target Start/End: Complemental strand, 36167818 - 36167725
Alignment:
| Q |
245 |
ttaatcaagtcataaaattagatttgaaagtgttaactaattgcaaagtttcaaatagttagtgatgataagctaacatattaatggtatgttca |
339 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| |||| |||| |||||||| |
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| T |
36167818 |
ttaatcaagtcataaaattagatttgaaagtgttaactaattgc-aagtgtcaaatagttagtgatgataagctaaaatatcaatgttatgttca |
36167725 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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