View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5489_low_18 (Length: 344)
Name: NF5489_low_18
Description: NF5489
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5489_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 99; Significance: 8e-49; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 161 - 275
Target Start/End: Complemental strand, 36168306 - 36168192
Alignment:
| Q |
161 |
tgctacatttttatctctggtctttaacataagatctttgattaagttgaaagagattatttatcatctcatttaaatattcatgaatatgcattgtttc |
260 |
Q |
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| T |
36168306 |
tgctacatttctatctctagtctccaacataagatctttgattaagttgaaagagattatttatcatctcatttaaatattcatgaatatgcattgtttc |
36168207 |
T |
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| Q |
261 |
ttaacatatacttat |
275 |
Q |
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| T |
36168206 |
ttaacatatacttat |
36168192 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 16 - 92
Target Start/End: Complemental strand, 36169025 - 36168949
Alignment:
| Q |
16 |
agagagagatagggatttattaggtgatgtttattggaattttggatggaaagtgttgattctattttctttttaat |
92 |
Q |
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| T |
36169025 |
agagagagatagggatttattaggtgatgtttattggaattttggatggaaagtgttgattttattttctttttaat |
36168949 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 106 - 143
Target Start/End: Complemental strand, 36168926 - 36168889
Alignment:
| Q |
106 |
cgtaaatattaatctatcgaaccatgtaaaactgcaat |
143 |
Q |
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| T |
36168926 |
cgtaaatattaatctatccaaccatgtaaaactgcaat |
36168889 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 309 - 344
Target Start/End: Complemental strand, 36168149 - 36168114
Alignment:
| Q |
309 |
tgaacacttgaacataggacagaaaaggatgtaaaa |
344 |
Q |
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| T |
36168149 |
tgaacacttcaacataggacagaaaaggatgtaaaa |
36168114 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 193 - 241
Target Start/End: Original strand, 7483328 - 7483376
Alignment:
| Q |
193 |
gatctttgattaagttgaaagagattatttatcatctcatttaaatatt |
241 |
Q |
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| T |
7483328 |
gatctatgattaagttggaagagatcatttatcatctcatctaaatatt |
7483376 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 238
Target Start/End: Original strand, 42097075 - 42097116
Alignment:
| Q |
197 |
tttgattaagttgaaagagattatttatcatctcatttaaat |
238 |
Q |
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| T |
42097075 |
tttgattaagttgaaagatatttcttatcatctcatttaaat |
42097116 |
T |
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