View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5489_low_24 (Length: 278)
Name: NF5489_low_24
Description: NF5489
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5489_low_24 |
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Alignment Details
Target: chr8 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 17 - 263
Target Start/End: Original strand, 31761545 - 31761791
Alignment:
| Q |
17 |
tgtgttaacatttgtagtattcttttgctataatatgtgtttttatattttgtttgtagctgtgtgataccgcaagcaatcataagcaaaagaggaaggg |
116 |
Q |
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| T |
31761545 |
tgtgttaacatttgtagtattcttttgctataatatgtgtttttatattttgtttgtagctgtgtgataccgcaagcaatcataagcaaaagaggaaggg |
31761644 |
T |
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| Q |
117 |
aaatctgtatcgaacatcaacagctccattttaagaactactatttataggagctatctacttctgaagcctaaaatgtaaccctttcaagaatgaatca |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31761645 |
aaatctgtatcgaacatcaacagctccattttaagaactactatttataggagctatctacttctgaagcctaaaatgtaaccctttcaagaatgaatca |
31761744 |
T |
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| Q |
217 |
tgatgttgtaacatgtaatgtaacagattcttatatccttagttatt |
263 |
Q |
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||||||||||||||||||||||||||| | |||||||||||||||| |
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| T |
31761745 |
tgatgttgtaacatgtaatgtaacagacttgtatatccttagttatt |
31761791 |
T |
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