View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5489_low_27 (Length: 256)

Name: NF5489_low_27
Description: NF5489
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5489_low_27
NF5489_low_27
[»] chr3 (2 HSPs)
chr3 (1-238)||(39711657-39711897)
chr3 (47-238)||(11527327-11527519)
[»] scaffold0009 (1 HSPs)
scaffold0009 (51-146)||(261251-261343)
[»] chr1 (1 HSPs)
chr1 (51-146)||(2828447-2828539)
[»] chr4 (1 HSPs)
chr4 (51-146)||(54590385-54590477)
[»] chr2 (3 HSPs)
chr2 (76-236)||(37895952-37896109)
chr2 (134-236)||(37953349-37953451)
chr2 (134-236)||(37959093-37959195)
[»] chr5 (1 HSPs)
chr5 (51-146)||(14744483-14744580)


Alignment Details
Target: chr3 (Bit Score: 201; Significance: 1e-110; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 39711657 - 39711897
Alignment:
Q  1 atcgaattatt-aataatgagagaaaaa-cactaacaagtcacacacattttattttaacgaaaagcacaaaa-acaagcataaactaattaaatgacaa 97  Q
    ||||||||||| |||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| ||    
T  39711657 atcgaattatttaataatgagagaaaaaacactaacaagccacacacattttattttaacgaaaagcacaaaaaacaagcacaaactaattaaatgataa 39711756  T
Q  98 tggtagcatctttgttactaatatttaaaaacttcaagtccttgttgaataagagaagagaaatattcaaactcctcacttttaagtaccaacccaaact 197  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39711757 ttgtagcatctttgttactaatatttaaaaacttcaagtccttgttgaataagagaagagaaatattcaaactcctcacttttaagtaccaacccaaact 39711856  T
Q  198 caagtccaccttctccatctccactttcagcaagagacaca 238  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  39711857 caagtccaccttctccatctccactttcagcaagagacaca 39711897  T

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Target: chr3; HSP #2
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 47 - 238
Target Start/End: Original strand, 11527327 - 11527519
Alignment:
Q  47 ttttattttaacgaaaagcacaaaaacaagcataaactaattaaatgacaatggtagcatctttgttactaat-atttaaaaacttcaagtccttgttga 145  Q
    |||| ||||| ||||||||||| |||||||||||||| |||||||||||||||| ||||| |||||||  | | |||| ||| |||||||||||||||||    
T  11527327 ttttcttttagcgaaaagcacacaaacaagcataaaccaattaaatgacaatggaagcatatttgttaaaatttattttaaagcttcaagtccttgttga 11527426  T
Q  146 ataagagaagagaaatattcaaactcctcacttttaagtaccaacccaaactcaagtccaccttctccatctccactttcagcaagagacaca 238  Q
    || |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11527427 atgagagaagataaatattcaaattcctcacttttaagtaccaacccaaactcaagtccaccttctccatctccactttcagcaagagacaca 11527519  T

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Target: scaffold0009 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 51 - 146
Target Start/End: Complemental strand, 261343 - 261251
Alignment:
Q  51 attttaacgaaaagcacaaaaacaagcataaactaattaaatgacaatggtagcatctttgttactaatatttaaaaacttcaagtccttgttgaa 146  Q
    |||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||   |||| ||||||| ||||||||||||||||||    
T  261343 attttaacgaaaagcacaaaaacaagcacaaactaattaaatgataatggtagcatctttgt---taatgtttaaaagcttcaagtccttgttgaa 261251  T

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Target: chr1 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 51 - 146
Target Start/End: Complemental strand, 2828539 - 2828447
Alignment:
Q  51 attttaacgaaaagcacaaaaacaagcataaactaattaaatgacaatggtagcatctttgttactaatatttaaaaacttcaagtccttgttgaa 146  Q
    ||||| |||||||||||||||||||||| ||||||||||||||| |||||||||||||||||   |||| ||||||| ||||||||||||||||||    
T  2828539 attttgacgaaaagcacaaaaacaagcacaaactaattaaatgataatggtagcatctttgt---taatgtttaaaagcttcaagtccttgttgaa 2828447  T

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Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 51 - 146
Target Start/End: Complemental strand, 54590477 - 54590385
Alignment:
Q  51 attttaacgaaaagcacaaaaacaagcataaactaattaaatgacaatggtagcatctttgttactaatatttaaaaacttcaagtccttgttgaa 146  Q
    ||||| |||||||||||||||||||||| ||||||||||||||| |||||||||||||||||   |||| ||||||| ||||||||| ||||||||    
T  54590477 attttgacgaaaagcacaaaaacaagcacaaactaattaaatgataatggtagcatctttgt---taatgtttaaaagcttcaagtctttgttgaa 54590385  T

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Target: chr2 (Bit Score: 55; Significance: 1e-22; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 76 - 236
Target Start/End: Original strand, 37895952 - 37896109
Alignment:
Q  76 gcataaactaattaaatgacaatggtagcatctttgttactaatatttaaaaacttcaagtccttgttgaataagagaagagaaatattcaaactcctca 175  Q
    |||||||||||||||  ||||||||||||| ||||||||  |   ||| ||| |||||||||| |||| ||| | || | | ||||||||||| ||  ||    
T  37895952 gcataaactaattaagagacaatggtagcacctttgttagca---tttcaaagcttcaagtccatgttcaattacagcacaaaaatattcaaattctcca 37896048  T
Q  176 cttttaagtaccaacccaaactcaagtccaccttctccatctccactttcagcaagagaca 236  Q
    |||||||  |||||||||| |||||| |||||||||| ||||||||||||||||| |||||    
T  37896049 cttttaaacaccaacccaacctcaagaccaccttctctatctccactttcagcaatagaca 37896109  T

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Target: chr2; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 134 - 236
Target Start/End: Complemental strand, 37953451 - 37953349
Alignment:
Q  134 agtccttgttgaataagagaagagaaatattcaaactcctcacttttaagtaccaacccaaactcaagtccaccttctccatctccactttcagcaagag 233  Q
    |||||||||||||| | |||||||||| ||||| | ||||||  ||| | | ||||||||| ||||||||||||||||| ||||||||||||||||| ||    
T  37953451 agtccttgttgaatgacagaagagaaacattcataatcctcagatttgaatgccaacccaacctcaagtccaccttctctatctccactttcagcaatag 37953352  T
Q  234 aca 236  Q
    |||    
T  37953351 aca 37953349  T

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Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 134 - 236
Target Start/End: Complemental strand, 37959195 - 37959093
Alignment:
Q  134 agtccttgttgaataagagaagagaaatattcaaactcctcacttttaagtaccaacccaaactcaagtccaccttctccatctccactttcagcaagag 233  Q
    |||||||||| ||| | |||||||||||||| ||| |||||   ||| | ||||||||||| ||||||||||||||||| || | |||||||||||| ||    
T  37959195 agtccttgttcaatgatagaagagaaatatttaaaatcctcggatttgaataccaacccaacctcaagtccaccttctctattttcactttcagcaatag 37959096  T
Q  234 aca 236  Q
    |||    
T  37959095 aca 37959093  T

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Target: chr5 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 51 - 146
Target Start/End: Original strand, 14744483 - 14744580
Alignment:
Q  51 attttaacgaaaagcacaaaaacaagcataaactaattaaatgacaatggtagcatcttt--gttactaatatttaaaaacttcaagtccttgttgaa 146  Q
    ||||| |||||||||||||||||||||| |||||||||| |||| |||||||||||||||   ||  |||| ||||||| ||||||||||||||||||    
T  14744483 attttgacgaaaagcacaaaaacaagcacaaactaattatatgataatggtagcatctttaatttgttaatgtttaaaagcttcaagtccttgttgaa 14744580  T

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