View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5489_low_28 (Length: 252)
Name: NF5489_low_28
Description: NF5489
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5489_low_28 |
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Alignment Details
Target: chr7 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 19822493 - 19822253
Alignment:
| Q |
1 |
ttactctaatgacaataattatgtcattatggaagaaaatatgagatctttatcctctgcaacaacaaaagatcaaaagaggacacttgcaacaacattg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19822493 |
ttactctaatgacaataattatgtcattatggaagaaaatatgagatctttatcctctgcaacaacaaaagatcaaaagaggacacttgcaacaacattg |
19822394 |
T |
|
| Q |
101 |
tcgaccaaaattaacacaaatcagacaaaaattaatcaaaagcatattttacacatcaaagtcactatttataaaattaattgaagtaaacacgtatgtt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19822393 |
tcgaccaaaattaacacaaatcagacaaaaattaatcaaaagcatattttacacatcaaagtcactatttataaaattaattgaagtaaacacgtatgtt |
19822294 |
T |
|
| Q |
201 |
cttataatnnnnnnnntgaaataaataaacggttcagaatt |
241 |
Q |
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|||||||| |||||||||||||||||| |||||| |
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| T |
19822293 |
cttataataaaaaaaatgaaataaataaacggtttagaatt |
19822253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 31 - 132
Target Start/End: Complemental strand, 30864255 - 30864154
Alignment:
| Q |
31 |
ggaagaaaatatgagatcttta-tcctctgcaacaacaaaagatcaaaagaggacacttgcaacaacattgtcgaccaaaattaacacaaatcagacaaa |
129 |
Q |
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||||| |||||||||||||| | ||||||| |||| ||||| ||||||||||||| ||| ||||||||||| || |||||||||| |||||| ||||| |
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| T |
30864255 |
ggaagtaaatatgagatcttcactcctctgaaacagcaaaaaatcaaaagaggacgcttaaaacaacattgttgatcaaaattaaccaaaatca-acaaa |
30864157 |
T |
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| Q |
130 |
aat |
132 |
Q |
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||| |
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| T |
30864156 |
aat |
30864154 |
T |
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