View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5489_low_29 (Length: 250)
Name: NF5489_low_29
Description: NF5489
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5489_low_29 |
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Alignment Details
Target: chr4 (Bit Score: 82; Significance: 8e-39; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 148 - 233
Target Start/End: Original strand, 40424910 - 40424995
Alignment:
| Q |
148 |
gattttaagcatatatgtgtttagcagtataatattaattaactttgctctgaatggaaaaaactatatacgtgtgtactagtcat |
233 |
Q |
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| T |
40424910 |
gattttaagcatatatgtgtttagcagtataatattaattaactttgctcggaatggaaaaaactatatacgtgtgtactagtcat |
40424995 |
T |
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Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 40424763 - 40424830
Alignment:
| Q |
1 |
tcacgtggacgatatcatatacaaagttatcaagtgtttgcacactatgcaaatattataccattgta |
68 |
Q |
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| T |
40424763 |
tcacgtggacgatatcctatacatagttatcaagtgtttgcacactatgcaaatattataccattgta |
40424830 |
T |
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