View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5489_low_3 (Length: 655)
Name: NF5489_low_3
Description: NF5489
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5489_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 533; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 533; E-Value: 0
Query Start/End: Original strand, 12 - 641
Target Start/End: Complemental strand, 9966980 - 9966353
Alignment:
| Q |
12 |
gattattctacttttcctgaaggtggatcagacgatggtgccggtggattttccggcacaggtgccgatggtcgaggaggaatttcttcatcaacatagt |
111 |
Q |
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|||| |||||||||| | |||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9966980 |
gattcttctacttttacggaaggtggctcagacgatggtgtcggtggattttccggcacaggtgccgatggtcgaggaggaatttcttcatcaacatagt |
9966881 |
T |
|
| Q |
112 |
aaattttcaagccaacttttccttgaaccatattgaacaaacttttcttcttcaactcataataaatcaaagcttcttcaccttttttcacaaactgggt |
211 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9966880 |
aaattttcaagccaacttttcctcgaaccatattgaacaaacttttcttcttcaactcataataaatcaaagcttcttcaccttttttcacaaactgggt |
9966781 |
T |
|
| Q |
212 |
cgagctaagtcgaacttgacccagcagagagttttctctccgggttggaccgtgttgcttatcatgataaacatcaagttcaaaaacatcaccgaaaatt |
311 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| |||||||||||||||||||||| ||||||||||| |||||| |
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| T |
9966780 |
cgagctaagtcgaacttgacccagc---gagttttctctccgggttggacggtgttgcatatcatgataaacatcaagttccaaaacatcaccaaaaatt |
9966684 |
T |
|
| Q |
312 |
tcgttacgttctccaacattaaacgacaatgtttcattccaaaccgggttcaagttgcgaaccaaggttcgagtttttcttctttgaccgtagaaatcaa |
411 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9966683 |
tcgttacgttctccaacattaaacgacaatgtttcattccaaaccgggttcaagtcgcgaaccaaggttcgagtttttcttctttgaccgtagaaatcaa |
9966584 |
T |
|
| Q |
412 |
ctactatgtacggacttgaagttccatgaccgtccttgggagctaggttttgtgcatctattacttctactataagttttctaacagtgaccattttggt |
511 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
9966583 |
ctactatgtacagacttgaagttccatgaccgtccttgggagctaggttttgtgcatctattacttctactataagttttctaacagtggccattttggt |
9966484 |
T |
|
| Q |
512 |
agttttgtggaaatggtgtgttcaagatttgtgtttatatgggtattatttcatgcatggtataagaaagatgaacggtggagtttgggattttgttggt |
611 |
Q |
| |
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||||||||||||||||| |||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
9966483 |
agttttgtggaaatggtatgtttaagatttgtgtttatatgtgtattatttcatgcatggtataagaaagatgaacggtggagtttgggattctgttggt |
9966384 |
T |
|
| Q |
612 |
at-gattgtgatgggtatgaggggtttgaaa |
641 |
Q |
| |
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| | |||||||||||||||||||||||||| |
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| T |
9966383 |
ttgggttgtgatgggtatgaggggtttgaaa |
9966353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 474; E-Value: 0
Query Start/End: Original strand, 12 - 641
Target Start/End: Complemental strand, 9936814 - 9936189
Alignment:
| Q |
12 |
gattattctacttttcctgaaggtggatcagacgatggtgccggtggattttccggcacaggtgccgatggtcgaggagga---atttcttcatcaacat |
108 |
Q |
| |
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|||| |||||||||||| || ||||| |||||||||||||||||||||||||||||||||||| ||| |||| |||||||| |||||||||||||||| |
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| T |
9936814 |
gattcttctacttttccggatggtggctcagacgatggtgccggtggattttccggcacaggtaccggtggtggaggaggaggaatttcttcatcaacat |
9936715 |
T |
|
| Q |
109 |
agtaaattttcaagccaacttttccttgaaccatattgaacaaacttttcttcttcaactcataataaatcaaagcttcttcaccttttttcacaaactg |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9936714 |
agtaaattttcaagccaacttttccttgaaccatattgaacaaacttttcttcttcaactcataataaatcaaagcttcttcaccttttttcacaaactg |
9936615 |
T |
|
| Q |
209 |
ggtcgagctaagtcgaacttgacccagcagagagttttctctccgggttggaccgtgttgcttatcatgataaacatcaagttcaaaaacatcaccgaaa |
308 |
Q |
| |
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|||||||||||||||||||||||||| |||||||||||||||||||||| ||||| | | |||||||||||||||||||| ||||||||||| ||| |
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| T |
9936614 |
tgtcgagctaagtcgaacttgacccagt---gagttttctctccgggttggactgtgtttcatttcatgataaacatcaagttccaaaacatcacctaaa |
9936518 |
T |
|
| Q |
309 |
atttcgttacgttctccaacattaaacgacaatgtttcattccaaaccgggttcaagttgcgaaccaaggttcgagtttttcttctttgaccgtagaaat |
408 |
Q |
| |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |
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| T |
9936517 |
atttcgttacgttctccaacattaaatgacaatgtttcattccaaaccgggttcaagtcgcgaaccaaggttcgagtttttcttctttgaccgtggaaat |
9936418 |
T |
|
| Q |
409 |
caactactatgtacggacttgaagttccatgaccgtccttgggagctaggttttgtgcatctattacttctactataagttttctaacagtgaccatttt |
508 |
Q |
| |
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||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
9936417 |
caattactatgtatggacttgaagttccatgaccgtccttgggagctaggttttgtgcatctattacttctactataagttttctaacagtggccatttt |
9936318 |
T |
|
| Q |
509 |
ggtagttttgtggaaatggtgtgttcaagatttgtgtttatatgggtattatttcatgcatggtataagaaagatgaacggtggagtttgggattttgtt |
608 |
Q |
| |
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||||||||||||||||||||||||| ||| |||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
9936317 |
ggtagttttgtggaaatggtgtgtttaaggtttgtgtttatatgtgtattatttcatgcatggtataagaa-----aacggtggagtttgggattttgtt |
9936223 |
T |
|
| Q |
609 |
ggtat-gattgtgatgggtatgaggggtttgaaa |
641 |
Q |
| |
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||| | | |||||||||||||||||||||||||| |
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|
| T |
9936222 |
ggtttgggttgtgatgggtatgaggggtttgaaa |
9936189 |
T |
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